CRISPRone

CRISPRone report for GCA_003397515.1_ASM339751v1

♦ Seq 1: QFTE01000045.1 Pseudomonas aeruginosa strain AUH-PA16 scaffold_44, whole genome shotgun sequence

⇒Summary: seq-len = 48068 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38251-47919 bp Zoom in on locus 1 x23 CRISPR array Location: 38251-39596 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 38251-39596 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39780-40343 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40347-41375 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41386-42369 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42356-43660 bp Gene: COG1203:cas3 Type: Type-I Location: 43718-46948 bp Gene: cd09718:cas1 Type: universal Location: 46945-47919 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38251-39596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QFTE01000024.1 Pseudomonas aeruginosa strain AUH-PA16 scaffold_23, whole genome shotgun sequence

⇒Summary: seq-len = 99869 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98577-99504 bp Zoom in on locus 1 x16 CRISPR array Location: 98577-99504 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 98577-99504 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98577-99504 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QFTE01000085.1 Pseudomonas aeruginosa strain AUH-PA16 scaffold_84, whole genome shotgun sequence

⇒Summary: seq-len = 2056 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 364-1953 bp Zoom in on locus 1 x27 CRISPR array Location: 364-1953 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 364-1953 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 364-1953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QFTE01000035.1 Pseudomonas aeruginosa strain AUH-PA16 scaffold_34, whole genome shotgun sequence

⇒Summary: seq-len = 77681 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54648-62909 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 54648-56258 bp Gene: pfam13280:WYL Type: other Location: 56419-57435 bp Gene: COG2378:WYL Type: other Location: 58177-59019 bp Gene: unk Type: unknown Location: 59069-59437 bp Gene: unk Type: unknown Location: 59503-60150 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 60543-62909 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)