CRISPRone

CRISPRone report for GCA_003410445.2_ASM341044v2

♦ Seq 1: QVAS02000019.1 Pseudomonas aeruginosa strain PABL105 NODE_19_length_123391_cov_51.1033, whole genome shotgun sequence

⇒Summary: seq-len = 123391 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122534-123282 bp Zoom in on locus 1 x13 CRISPR array Location: 122534-123282 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 122534-123282 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122534-123282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVAS02000040.1 Pseudomonas aeruginosa strain PABL105 NODE_40_length_48731_cov_47.496, whole genome shotgun sequence

⇒Summary: seq-len = 48731 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-10709 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 110-678 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 110-678 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 929-1903 bp Gene: COG1203:cas3 Type: Type-I Location: 1900-5130 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5541-6842 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6829-7812 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7823-8851 bp Gene: cd09739:cas6f Type: other Location: 8855-9418 bp CRISPR array Location: 9602-10709 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9602-10709 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110-678 bp]: array | spacers
           [Locus range 9602-10709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)