CRISPRone

CRISPRone report for GCA_003410505.2_ASM341050v2

♦ Seq 1: QVBG02000051.1 Pseudomonas aeruginosa strain PABL090 NODE_51_length_42665_cov_54.0213, whole genome shotgun sequence

⇒Summary: seq-len = 42665 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-11748 bp Zoom in on locus 1 x29 x23 CRISPR array Location: 110-1819 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 110-1819 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09718:cas1 Type: universal Location: 2080-3054 bp Gene: COG1203:cas3 Type: Type-I Location: 3051-6281 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6339-7643 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7630-8613 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8624-9652 bp Gene: cd09739:cas6f Type: other Location: 9656-10219 bp CRISPR array Location: 10404-11748 bp Num of repeats: 23 Spacers: s29-s50 CRISPR array Location: 10404-11748 bp Num of repeats: 23 Spacers: s29-s50 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110-1819 bp]: array | spacers
           [Locus range 10404-11748 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVBG02000010.1 Pseudomonas aeruginosa strain PABL090 NODE_10_length_146062_cov_67.7925, whole genome shotgun sequence

⇒Summary: seq-len = 146062 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98214-106475 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98214-99824 bp Gene: pfam13280:WYL Type: other Location: 99985-101001 bp Gene: COG2378:WYL Type: other Location: 101743-102585 bp Gene: unk Type: unknown Location: 102716-103003 bp Gene: unk Type: unknown Location: 103138-103716 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104109-106475 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QVBG02000011.1 Pseudomonas aeruginosa strain PABL090 NODE_11_length_137654_cov_58.6676, whole genome shotgun sequence

⇒Summary: seq-len = 137654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-1038 bp Zoom in on locus 1 x16 CRISPR array Location: 110-1038 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 110-1038 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-1038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)