CRISPRone

CRISPRone report for GCA_003410515.2_ASM341051v2

♦ Seq 1: QVAU02000047.1 Pseudomonas aeruginosa strain PABL103 NODE_47_length_48193_cov_61.5248, whole genome shotgun sequence

⇒Summary: seq-len = 48193 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27740-39777 bp Zoom in on locus 1 x29 x18 CRISPR array Location: 27740-29478 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 27740-29478 bp Num of repeats: 29 Spacers: s1-s28 Gene: pfam09707:cas2 Type: universal Location: 29543-29842 bp Gene: cd09719:cas1 Type: universal Location: 29839-30729 bp Gene: pfam08798:cas6e Type: other Location: 30756-31295 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 31342-32004 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 32006-33148 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 33158-33688 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 33685-35253 bp Gene: cd09641:cas3HD Type: Type-I Location: 35256-37937 bp CRISPR array Location: 38712-39777 bp Num of repeats: 18 Spacers: s29-s45 CRISPR array Location: 38712-39777 bp Num of repeats: 18 Spacers: s29-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27740-29478 bp]: array | spacers
           [Locus range 38712-39777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)