CRISPRone

CRISPRone report for GCA_003410585.2_ASM341058v2

♦ Seq 1: QVAV02000017.1 Pseudomonas aeruginosa strain PABL102 NODE_17_length_121386_cov_67.5446, whole genome shotgun sequence

⇒Summary: seq-len = 121386 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-739 bp Zoom in on locus 1 x11 CRISPR array Location: 110-739 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 110-739 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-739 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVAV02000041.1 Pseudomonas aeruginosa strain PABL102 NODE_41_length_43995_cov_61.7646, whole genome shotgun sequence

⇒Summary: seq-len = 43995 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-9277 bp Zoom in on locus 1 x8 x3 CRISPR array Location: 110-558 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 110-558 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09718:cas1 Type: universal Location: 809-1783 bp Gene: COG1203:cas3 Type: Type-I Location: 1780-5010 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5068-6372 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6359-7342 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7353-8381 bp Gene: cd09739:cas6f Type: other Location: 8385-8948 bp CRISPR array Location: 9131-9277 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 9131-9277 bp Num of repeats: 3 Spacers: s8-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110-558 bp]: array | spacers
           [Locus range 9131-9277 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)