CRISPRone

CRISPRone report for GCA_003410595.2_ASM341059v2

♦ Seq 1: QVAW02000029.1 Pseudomonas aeruginosa strain PABL101 NODE_29_length_55946_cov_54.1412, whole genome shotgun sequence

⇒Summary: seq-len = 55946 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20578-30837 bp Zoom in on locus 1 x15 x14 CRISPR array Location: 20578-21447 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 20578-21447 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 21707-22681 bp Gene: COG1203:cas3 Type: Type-I Location: 22678-25908 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25966-27270 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27257-28240 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28251-29279 bp Gene: cd09739:cas6f Type: other Location: 29283-29846 bp CRISPR array Location: 30030-30837 bp Num of repeats: 14 Spacers: s15-s27 CRISPR array Location: 30030-30837 bp Num of repeats: 14 Spacers: s15-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20578-21447 bp]: array | spacers
           [Locus range 30030-30837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVAW02000046.1 Pseudomonas aeruginosa strain PABL101 NODE_46_length_45132_cov_54.0092, whole genome shotgun sequence

⇒Summary: seq-len = 45132 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26444-36861 bp Zoom in on locus 1 x16 x14 CRISPR array Location: 26444-27387 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 26444-27387 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 27452-27751 bp Gene: cd09719:cas1 Type: universal Location: 27748-28059 bp Gene: pfam08798:cas6e Type: other Location: 28086-28625 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 28672-29334 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 29336-30478 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 30488-31018 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 31015-32583 bp Gene: cd09641:cas3HD Type: Type-I Location: 32586-35267 bp CRISPR array Location: 36040-36861 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 36040-36861 bp Num of repeats: 14 Spacers: s16-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26444-27387 bp]: array | spacers
           [Locus range 36040-36861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)