CRISPRone

CRISPRone report for GCA_003410625.2_ASM341062v2

♦ Seq 1: QVBY02000048.1 Pseudomonas aeruginosa strain PABL071 NODE_48_length_48112_cov_67.2338, whole genome shotgun sequence

⇒Summary: seq-len = 48112 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8357-20395 bp Zoom in on locus 1 x18 x29 CRISPR array Location: 8357-9423 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 8357-9423 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09641:cas3HD Type: Type-I Location: 10197-12878 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12881-14449 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14446-14976 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14986-16128 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16130-16792 bp Gene: pfam08798:cas6e Type: other Location: 16767-17378 bp Gene: cd09719:cas1 Type: universal Location: 17405-18295 bp Gene: pfam09707:cas2 Type: universal Location: 18292-18591 bp CRISPR array Location: 18656-20395 bp Num of repeats: 29 Spacers: s18-s45 CRISPR array Location: 18656-20395 bp Num of repeats: 29 Spacers: s18-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8357-9423 bp]: array | spacers
           [Locus range 18656-20395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)