CRISPRone

CRISPRone report for GCA_003410715.2_ASM341071v2

♦ Seq 1: QVBW02000014.1 Pseudomonas aeruginosa strain PABL073 NODE_14_length_121312_cov_99.7243, whole genome shotgun sequence

⇒Summary: seq-len = 121312 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146-894 bp Zoom in on locus 1 x13 CRISPR array Location: 146-894 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 146-894 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 146-894 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVBW02000008.1 Pseudomonas aeruginosa strain PABL073 NODE_8_length_184264_cov_128.279, whole genome shotgun sequence

⇒Summary: seq-len = 184264 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146544-155551 bp Zoom in on locus 1 x19 Gene: cd09641:cas3HD Type: Type-I Location: 146544-148778 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 148829-149503 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 149500-151263 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 151275-152144 bp Gene: pfam01930:cas4 Type: Type-I Location: 152163-152795 bp Gene: cd09721:cas1 Type: universal Location: 152915-153838 bp Gene: cd09725:cas2 Type: universal Location: 153848-154138 bp CRISPR array Location: 154320-155551 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 154320-155551 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 154320-155551 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QVBW02000043.1 Pseudomonas aeruginosa strain PABL073 NODE_43_length_49810_cov_88.8795, whole genome shotgun sequence

⇒Summary: seq-len = 49810 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38158-49665 bp Zoom in on locus 1 x19 x25 CRISPR array Location: 38158-39263 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38158-39263 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39447-40010 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40014-41042 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41053-42036 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42023-43324 bp Gene: COG1203:cas3 Type: Type-I Location: 43735-46965 bp Gene: cd09718:cas1 Type: universal Location: 46962-47936 bp CRISPR array Location: 48197-49665 bp Num of repeats: 25 Spacers: s19-s42 CRISPR array Location: 48197-49665 bp Num of repeats: 25 Spacers: s19-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38158-39263 bp]: array | spacers
           [Locus range 48197-49665 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)