CRISPRone

CRISPRone report for GCA_003410845.2_ASM341084v2

♦ Seq 1: QVBD02000111.1 Pseudomonas aeruginosa strain PABL093 NODE_111_length_22094_cov_33.4177, whole genome shotgun sequence

⇒Summary: seq-len = 22094 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8454-20492 bp Zoom in on locus 1 x18 x29 CRISPR array Location: 8454-9520 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 8454-9520 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09641:cas3HD Type: Type-I Location: 10294-12975 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12978-14546 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14543-15073 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15083-16225 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16227-16889 bp Gene: pfam08798:cas6e Type: other Location: 16864-17475 bp Gene: cd09719:cas1 Type: universal Location: 17502-18392 bp Gene: pfam09707:cas2 Type: universal Location: 18389-18688 bp CRISPR array Location: 18753-20492 bp Num of repeats: 29 Spacers: s18-s45 CRISPR array Location: 18753-20492 bp Num of repeats: 29 Spacers: s18-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8454-9520 bp]: array | spacers
           [Locus range 18753-20492 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)