CRISPRone

CRISPRone report for GCA_003411045.2_ASM341104v2

♦ Seq 1: QVBO02000087.1 Pseudomonas aeruginosa strain PABL081 NODE_87_length_21150_cov_65.808, whole genome shotgun sequence

⇒Summary: seq-len = 21150 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10983-21041 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 10983-11550 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 10983-11550 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 11733-12296 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 12300-13328 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 13339-14322 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 14309-15610 bp Gene: COG1203:cas3 Type: Type-I Location: 16021-19251 bp Gene: cd09718:cas1 Type: universal Location: 19248-20222 bp CRISPR array Location: 20474-21041 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 20474-21041 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10983-11550 bp]: array | spacers
           [Locus range 20474-21041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVBO02000203.1 Pseudomonas aeruginosa strain PABL081 NODE_203_length_8621_cov_65.011, whole genome shotgun sequence

⇒Summary: seq-len = 8621 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-679 bp Zoom in on locus 1 x10 CRISPR array Location: 110-679 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 110-679 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QVBO02000058.1 Pseudomonas aeruginosa strain PABL081 NODE_58_length_32453_cov_90.5663, whole genome shotgun sequence

⇒Summary: seq-len = 32453 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15868-21315 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 15868-16737 bp Gene: unk Type: unknown Location: 17078-17290 bp Gene: unk Type: unknown Location: 17396-19534 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 19531-21315 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)