CRISPRone

CRISPRone report for GCA_003411115.2_ASM341111v2

♦ Seq 1: QVBP02000044.1 Pseudomonas aeruginosa strain PABL080 NODE_44_length_48538_cov_74.7155, whole genome shotgun sequence

⇒Summary: seq-len = 48538 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-11197 bp Zoom in on locus 1 x17 x20 CRISPR array Location: 110-1099 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 110-1099 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1359-2333 bp Gene: COG1203:cas3 Type: Type-I Location: 2330-5560 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5971-7272 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7259-8242 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8253-9281 bp Gene: cd09739:cas6f Type: other Location: 9285-9848 bp CRISPR array Location: 10033-11197 bp Num of repeats: 20 Spacers: s17-s35 CRISPR array Location: 10033-11197 bp Num of repeats: 20 Spacers: s17-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110-1099 bp]: array | spacers
           [Locus range 10033-11197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVBP02000081.1 Pseudomonas aeruginosa strain PABL080 NODE_81_length_17730_cov_74.3835, whole genome shotgun sequence

⇒Summary: seq-len = 17730 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-859 bp Zoom in on locus 1 x13 CRISPR array Location: 110-859 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 110-859 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)