CRISPRone

CRISPRone report for GCA_003411165.2_ASM341116v2

♦ Seq 1: QVBS02000036.1 Pseudomonas aeruginosa strain PABL077 NODE_36_length_47402_cov_92.1699, whole genome shotgun sequence

⇒Summary: seq-len = 47402 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-10068 bp Zoom in on locus 1 x11 x13 CRISPR array Location: 110-738 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 110-738 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 998-1972 bp Gene: COG1203:cas3 Type: Type-I Location: 1969-5199 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5257-6561 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6548-7531 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7542-8570 bp Gene: cd09739:cas6f Type: other Location: 8574-9137 bp CRISPR array Location: 9321-10068 bp Num of repeats: 13 Spacers: s11-s22 CRISPR array Location: 9321-10068 bp Num of repeats: 13 Spacers: s11-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110-738 bp]: array | spacers
           [Locus range 9321-10068 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVBS02000052.1 Pseudomonas aeruginosa strain PABL077 NODE_52_length_18275_cov_88.8842, whole genome shotgun sequence

⇒Summary: seq-len = 18275 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16878-18166 bp Zoom in on locus 1 x22 CRISPR array Location: 16878-18166 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 16878-18166 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16878-18166 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)