CRISPRone

CRISPRone report for GCA_003411355.2_ASM341135v2

♦ Seq 1: QVDO02000050.1 Pseudomonas aeruginosa strain PABL026 NODE_50_length_37139_cov_69.4039, whole genome shotgun sequence

⇒Summary: seq-len = 37139 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25810-37030 bp Zoom in on locus 1 x21 x24 CRISPR array Location: 25810-27038 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 25810-27038 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09739:cas6f Type: other Location: 27222-27785 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27789-28817 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28828-29811 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29798-31102 bp Gene: COG1203:cas3 Type: Type-I Location: 31160-34390 bp Gene: cd09718:cas1 Type: universal Location: 34387-35361 bp CRISPR array Location: 35622-37030 bp Num of repeats: 24 Spacers: s21-s43 CRISPR array Location: 35622-37030 bp Num of repeats: 24 Spacers: s21-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25810-27038 bp]: array | spacers
           [Locus range 35622-37030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVDO02000008.1 Pseudomonas aeruginosa strain PABL026 NODE_8_length_181981_cov_80.8167, whole genome shotgun sequence

⇒Summary: seq-len = 181981 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158110-170818 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 158110-159024 bp Gene: unk Type: unknown Location: 159488-159988 bp Gene: unk Type: unknown Location: 159988-160890 bp Gene: mkCas0090:PD-DExK Type: other Location: 160929-161654 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 170042-170818 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QVDO02000001.1 Pseudomonas aeruginosa strain PABL026 NODE_1_length_616657_cov_74.8549, whole genome shotgun sequence

⇒Summary: seq-len = 616657 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120348-121036 bp Zoom in on locus 1 x12 CRISPR array Location: 120348-121036 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 120348-121036 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120348-121036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)