CRISPRone

CRISPRone report for GCA_003411695.2_ASM341169v2

♦ Seq 1: QVCS02000045.1 Pseudomonas aeruginosa strain PABL051 NODE_45_length_43116_cov_32.9368, whole genome shotgun sequence

⇒Summary: seq-len = 43116 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4441-15438 bp Zoom in on locus 1 x12 x18 CRISPR array Location: 4441-5141 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4441-5141 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 5913-8594 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 8597-10165 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 10162-10692 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 10702-11844 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 11846-12508 bp Gene: pfam08798:cas6e Type: other Location: 12483-13094 bp Gene: cd09719:cas1 Type: universal Location: 13121-14011 bp Gene: pfam09707:cas2 Type: universal Location: 14008-14307 bp CRISPR array Location: 14372-15438 bp Num of repeats: 18 Spacers: s12-s28 CRISPR array Location: 14372-15438 bp Num of repeats: 18 Spacers: s12-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4441-5141 bp]: array | spacers
           [Locus range 14372-15438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVCS02000093.1 Pseudomonas aeruginosa strain PABL051 NODE_93_length_17256_cov_31.2062, whole genome shotgun sequence

⇒Summary: seq-len = 17256 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119-1109 bp Zoom in on locus 1 x17 CRISPR array Location: 119-1109 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 119-1109 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 119-1109 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)