CRISPRone

CRISPRone report for GCA_003411725.2_ASM341172v2

♦ Seq 1: QVDQ02000160.1 Pseudomonas aeruginosa strain PABL023 NODE_161_length_1629_cov_74.385, whole genome shotgun sequence

⇒Summary: seq-len = 1629 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61-1049 bp Zoom in on locus 1 x17 CRISPR array Location: 61-1049 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 61-1049 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61-1049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVDQ02000081.1 Pseudomonas aeruginosa strain PABL023 NODE_81_length_20827_cov_77.1599, whole genome shotgun sequence

⇒Summary: seq-len = 20827 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61-9840 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 61-569 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 61-569 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09718:cas1 Type: universal Location: 833-1807 bp Gene: COG1203:cas3 Type: Type-I Location: 1804-5034 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5092-6396 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6383-7366 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7377-8405 bp Gene: cd09739:cas6f Type: other Location: 8409-8972 bp CRISPR array Location: 9157-9840 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 9157-9840 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 61-569 bp]: array | spacers
           [Locus range 9157-9840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)