CRISPRone

CRISPRone report for GCA_003411765.2_ASM341176v2

♦ Seq 1: QVED02000014.1 Pseudomonas aeruginosa strain PABL007 NODE_14_length_169766_cov_48.5629, whole genome shotgun sequence

⇒Summary: seq-len = 169766 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 273-1021 bp Zoom in on locus 1 x13 CRISPR array Location: 273-1021 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 273-1021 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 273-1021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVED02000011.1 Pseudomonas aeruginosa strain PABL007 NODE_11_length_186959_cov_59.2431, whole genome shotgun sequence

⇒Summary: seq-len = 186959 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 150376-159378 bp Zoom in on locus 1 x19 Gene: cd09641:cas3HD Type: Type-I Location: 150376-152610 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 152661-153335 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 153332-155095 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 155107-155976 bp Gene: pfam01930:cas4 Type: Type-I Location: 155995-156627 bp Gene: cd09721:cas1 Type: universal Location: 156631-157671 bp Gene: cd09725:cas2 Type: universal Location: 157681-157971 bp CRISPR array Location: 158153-159378 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 158153-159378 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 158153-159378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)