CRISPRone

CRISPRone report for GCA_003412045.2_ASM341204v2

♦ Seq 1: QVDV02000054.1 Pseudomonas aeruginosa strain PABL018 NODE_54_length_35871_cov_70.4297, whole genome shotgun sequence

⇒Summary: seq-len = 35871 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25120-35556 bp Zoom in on locus 1 x20 x12 CRISPR array Location: 25120-26288 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 25120-26288 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 26470-27033 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27037-28065 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28076-29059 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29046-30350 bp Gene: COG1203:cas3 Type: Type-I Location: 30408-33638 bp Gene: cd09718:cas1 Type: universal Location: 33635-34609 bp CRISPR array Location: 34870-35556 bp Num of repeats: 12 Spacers: s20-s30 CRISPR array Location: 34870-35556 bp Num of repeats: 12 Spacers: s20-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25120-26288 bp]: array | spacers
           [Locus range 34870-35556 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVDV02000109.1 Pseudomonas aeruginosa strain PABL018 NODE_109_length_17273_cov_64.0107, whole genome shotgun sequence

⇒Summary: seq-len = 17273 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 316-1124 bp Zoom in on locus 1 x14 CRISPR array Location: 316-1124 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 316-1124 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 316-1124 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)