CRISPRone

CRISPRone report for GCA_003412215.2_ASM341221v2

♦ Seq 1: QVDX02000074.1 Pseudomonas aeruginosa strain PABL015 NODE_74_length_25412_cov_72.1698, whole genome shotgun sequence

⇒Summary: seq-len = 25412 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146-11953 bp Zoom in on locus 1 x23 x26 CRISPR array Location: 146-1495 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 146-1495 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1755-2729 bp Gene: COG1203:cas3 Type: Type-I Location: 2726-5956 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6367-7668 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7655-8638 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8649-9677 bp Gene: cd09739:cas6f Type: other Location: 9681-10244 bp CRISPR array Location: 10429-11953 bp Num of repeats: 26 Spacers: s23-s47 CRISPR array Location: 10429-11953 bp Num of repeats: 26 Spacers: s23-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 146-1495 bp]: array | spacers
           [Locus range 10429-11953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVDX02000102.1 Pseudomonas aeruginosa strain PABL015 NODE_102_length_16905_cov_66.8218, whole genome shotgun sequence

⇒Summary: seq-len = 16905 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 146-775 bp Zoom in on locus 1 x11 CRISPR array Location: 146-775 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 146-775 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 146-775 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)