CRISPRone

CRISPRone report for GCA_003412275.2_ASM341227v2

♦ Seq 1: QVEA02000068.1 Pseudomonas aeruginosa strain PABL011 NODE_68_length_31092_cov_70.1376, whole genome shotgun sequence

⇒Summary: seq-len = 31092 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14205-19652 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 14205-15074 bp Gene: unk Type: unknown Location: 15415-15627 bp Gene: unk Type: unknown Location: 15733-17871 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 17868-19652 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVEA02000085.1 Pseudomonas aeruginosa strain PABL011 NODE_85_length_21055_cov_53.5399, whole genome shotgun sequence

⇒Summary: seq-len = 21055 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10888-20946 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 10888-11455 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 10888-11455 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 11638-12201 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 12205-13233 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 13244-14227 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 14214-15515 bp Gene: COG1203:cas3 Type: Type-I Location: 15926-19156 bp Gene: cd09718:cas1 Type: universal Location: 19153-20127 bp CRISPR array Location: 20379-20946 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 20379-20946 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10888-11455 bp]: array | spacers
           [Locus range 20379-20946 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QVEA02000095.1 Pseudomonas aeruginosa strain PABL011 NODE_95_length_17811_cov_43.6102, whole genome shotgun sequence

⇒Summary: seq-len = 17811 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-679 bp Zoom in on locus 1 x10 CRISPR array Location: 110-679 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 110-679 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)