CRISPRone

CRISPRone report for GCA_003412355.2_ASM341235v2

♦ Seq 1: QVBA02000001.1 Pseudomonas aeruginosa strain PABL096 NODE_1_length_528001_cov_63.3514, whole genome shotgun sequence

⇒Summary: seq-len = 528001 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3744-15175 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 3744-4046 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 12259-12564 bp Gene: unk Type: unknown Location: 12823-12984 bp Gene: unk Type: unknown Location: 13099-13689 bp Gene: cd09641:cas3HD Type: Type-I Location: 13505-15175 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QVBA02000070.1 Pseudomonas aeruginosa strain PABL096 NODE_70_length_16974_cov_52.3061, whole genome shotgun sequence

⇒Summary: seq-len = 16974 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16195-16702 bp Zoom in on locus 1 x9 CRISPR array Location: 16195-16702 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 16195-16702 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16195-16702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QVBA02000042.1 Pseudomonas aeruginosa strain PABL096 NODE_42_length_48139_cov_52.7656, whole genome shotgun sequence

⇒Summary: seq-len = 48139 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272-10830 bp Zoom in on locus 1 x11 x23 CRISPR array Location: 272-900 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 272-900 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 1160-2134 bp Gene: COG1203:cas3 Type: Type-I Location: 2131-5361 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5419-6723 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6710-7693 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7704-8732 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 8736-9299 bp CRISPR array Location: 9483-10830 bp Num of repeats: 23 Spacers: s11-s32 CRISPR array Location: 9483-10830 bp Num of repeats: 23 Spacers: s11-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 272-900 bp]: array | spacers
           [Locus range 9483-10830 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)