CRISPRone

CRISPRone report for GCA_003436285.1_ASM343628v1

♦ Seq 1: QSOR01000018.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf18, whole genome shotgun sequence

⇒Summary: seq-len = 93913 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17359-19867 bp Zoom in on locus 1 x12 Gene: cd09652:cas6 Type: other Location: 17359-18030 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 18042-18422 bp Gene: cd09722:cas1 Type: universal Location: 18415-18654 bp Gene: cd09725:cas2 Type: universal Location: 18657-18920 bp CRISPR array Location: 19133-19867 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 19133-19867 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19133-19867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QSOR01000003.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf3, whole genome shotgun sequence

⇒Summary: seq-len = 405910 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129953-133566 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 129953-130621 bp Gene: unk Type: unknown Location: 130624-131397 bp Gene: unk Type: unknown Location: 131405-132670 bp Gene: pfam13280:WYL Type: other Location: 132667-133566 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QSOR01000010.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf10, whole genome shotgun sequence

⇒Summary: seq-len = 207023 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 799-9255 bp Zoom in on locus 1 x23 CRISPR array Location: 799-2533 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 799-2533 bp Num of repeats: 23 Spacers: s1-s22 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2642-2974 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2978-3910 bp Gene: unk Type: unknown Location: 4030-4338 bp Gene: unk Type: unknown Location: 4405-4929 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4945-9255 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 799-2533 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QSOR01000001.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf1, whole genome shotgun sequence

⇒Summary: seq-len = 666198 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 555356-570462 bp Zoom in on locus 1 x22 Gene: cls000004:cas6 Type: other Location: 555356-556024 bp Gene: unk Type: unknown Location: 556042-556668 bp Gene: unk Type: unknown Location: 556644-557423 bp Gene: cash17:cash17 Type: Type- Location: 557468-558895 bp Gene: unk Type: unknown Location: 558892-559371 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 559385-560794 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 560799-562601 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 562594-563733 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 563753-564592 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 564605-565015 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 565012-565962 bp Gene: cd09634:cas1 Type: universal Location: 565982-568252 bp Gene: cd09725:cas2 Type: universal Location: 568246-568536 bp CRISPR array Location: 568984-570462 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 568984-570462 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 568984-570462 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)