CRISPRone

CRISPRone report for GCA_003439045.1_ASM343904v1

♦ Seq 1: QSUQ01000077.1 Bacteroides fragilis strain OM05-11 OM05-11.Scaf77, whole genome shotgun sequence

⇒Summary: seq-len = 18861 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18496-18746 bp Zoom in on locus 1 x4 CRISPR array Location: 18496-18746 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18496-18746 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18496-18746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QSUQ01000009.1 Bacteroides fragilis strain OM05-11 OM05-11.Scaf9, whole genome shotgun sequence

⇒Summary: seq-len = 108979 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45400-49010 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 45400-46299 bp Gene: unk Type: unknown Location: 46296-47561 bp Gene: unk Type: unknown Location: 47569-48342 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 48345-49010 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QSUQ01000095.1 Bacteroides fragilis strain OM05-11 OM05-11.Scaf95, whole genome shotgun sequence

⇒Summary: seq-len = 8135 bp; # of CRISPR array = 0; # of cas gene = 7  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 232-7679 bp Zoom in on locus 1 Gene: pfam12469:cas10 Type: Subtype-III-B Location: 232-2034 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2027-2785 bp Gene: cd09656:cmr3gr5 Type: Subtype-III-B Location: 2809-3162 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3182-4021 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4034-4288 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4667-5389 bp Gene: cd09634:cas1 Type: universal Location: 5409-7679 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QSUQ01000089.1 Bacteroides fragilis strain OM05-11 OM05-11.Scaf89, whole genome shotgun sequence

⇒Summary: seq-len = 9280 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8650-9256 bp Zoom in on locus 1 x9 CRISPR array Location: 8650-9256 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8650-9256 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8650-9256 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)