CRISPRone

CRISPRone report for GCA_003439065.1_ASM343906v1

♦ Seq 1: QSUS01000007.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf7, whole genome shotgun sequence

⇒Summary: seq-len = 249091 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24109-27719 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 24109-24774 bp Gene: unk Type: unknown Location: 24777-25550 bp Gene: unk Type: unknown Location: 25558-26823 bp Gene: pfam13280:WYL Type: other Location: 26820-27719 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QSUS01000006.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf6, whole genome shotgun sequence

⇒Summary: seq-len = 259184 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137240-137415 bp Zoom in on locus 1 x3 CRISPR array Location: 137240-137415 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 137240-137415 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 137240-137415 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QSUS01000001.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf1, whole genome shotgun sequence

⇒Summary: seq-len = 860544 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 376797-387156 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 376797-378605 bp Gene: COG4804:PD-DExK Type: other Location: 382234-383520 bp Gene: unk Type: unknown Location: 383584-384897 bp Gene: unk Type: unknown Location: 385312-386541 bp Gene: mkCas0194:cse2gr11 Type: Subtype-I-E Location: 386626-387156 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QSUS01000002.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf2, whole genome shotgun sequence

⇒Summary: seq-len = 782339 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 384890-397077 bp Zoom in on locus 1 x68 CRISPR array Location: 384890-389215 bp Num of repeats: 68 Spacers: s1-s67 CRISPR array Location: 384890-389215 bp Num of repeats: 68 Spacers: s1-s67 Gene: cd09725:cas2 Type: universal Location: 389429-389692 bp Gene: cd09722:cas1 Type: universal Location: 389695-390708 bp Gene: pfam01930:cas4 Type: Type-I Location: 390705-391262 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 391282-392340 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 392353-393678 bp Gene: COG1203:cas3 Type: Type-I Location: 393682-395841 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 395831-396394 bp Gene: cd09652:cas6 Type: other Location: 396406-397077 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 384890-389215 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)