CRISPRone

CRISPRone report for GCA_003456975.1_ASM345697v1

♦ Seq 1: CP020378.1 Clostridioides difficile strain DSM 102859 chromosome, complete genome

⇒Summary: seq-len = 4247015 bp; # of CRISPR array = 9; # of cas gene = 21  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1426711-1427667 bp 2 Locus 2: 1648741-1648836 bp 3 Locus 3: 1760025-1760383 bp 4 Locus 4: 1935990-1937202 bp 5 Locus 5: 2269955-2273664 bp 6 Locus 6: 2740888-2751874 bp 7 Locus 7: 2801420-2812815 bp 8 Locus 8: 2885378-2885604 bp 9 Locus 9: 3098442-3099388 bp 10 Locus 10: 3454037-3466537 bp 11 Locus 11: 3824252-3824831 bp Zoom in on locus 1 x15 Zoom in on locus 2 x2 Zoom in on locus 3 x6 Zoom in on locus 4 x19 Zoom in on locus 5 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x4 Zoom in on locus 9 x15 Zoom in on locus 10 x45 Zoom in on locus 11 x3 x6 CRISPR array Location: 1426711-1427667 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1426711-1427667 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1648741-1648836 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 1648741-1648836 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 1760025-1760383 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 1760025-1760383 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 1935990-1937202 bp Num of repeats: 19 Spacers: s21-s38 CRISPR array Location: 1935990-1937202 bp Num of repeats: 19 Spacers: s21-s38 Gene: COG0640:csa3 Type: Subtype-I-A Location: 2269955-2270254 bp Gene: unk Type: unknown Location: 2270851-2270985 bp Gene: unk Type: unknown Location: 2271196-2271948 bp Gene: cd09718:cas1 Type: universal Location: 2272009-2273664 bp Gene: cd06127:DEDDh Type: Type-I Location: 2740888-2741394 bp Gene: unk Type: unknown Location: 2741553-2742221 bp Gene: unk Type: unknown Location: 2742634-2743140 bp Gene: cd06127:DEDDh Type: Type-I Location: 2743512-2744549 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2751389-2751874 bp Gene: cas14:cas14 Type: Type-V Location: 2801420-2802538 bp Gene: unk Type: unknown Location: 2803179-2803541 bp Gene: unk Type: unknown Location: 2803560-2804507 bp Gene: cd09641:cas3HD Type: Type-I Location: 2804948-2807356 bp Gene: cd09693:cas5 Type: Type-I Location: 2807383-2808180 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2808196-2809212 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2809231-2810706 bp Gene: pfam01881:cas6 Type: other Location: 2810711-2811448 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2811706-2812815 bp CRISPR array Location: 2885378-2885604 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 2885378-2885604 bp Num of repeats: 4 Spacers: s39-s41 CRISPR array Location: 3098442-3099388 bp Num of repeats: 15 Spacers: s42-s55 CRISPR array Location: 3098442-3099388 bp Num of repeats: 15 Spacers: s42-s55 CRISPR array Location: 3454037-3456960 bp Num of repeats: 45 Spacers: s56-s99 CRISPR array Location: 3454037-3456960 bp Num of repeats: 45 Spacers: s56-s99 Gene: cd09725:cas2 Type: universal Location: 3457144-3457410 bp Gene: cd09722:cas1 Type: universal Location: 3457413-3458393 bp Gene: pfam01930:cas4 Type: Type-I Location: 3458396-3458914 bp Gene: COG1203:cas3 Type: Type-I Location: 3458962-3461283 bp Gene: cd09693:cas5 Type: Type-I Location: 3461294-3461995 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3461997-3462911 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3462913-3464763 bp Gene: pfam01881:cas6 Type: other Location: 3464769-3465563 bp Gene: pfam13280:WYL Type: other Location: 3465584-3466537 bp CRISPR array Location: 3824252-3824412 bp Num of repeats: 3 Spacers: s100-s101 CRISPR array Location: 3824252-3824412 bp Num of repeats: 3 Spacers: s100-s101 CRISPR array Location: 3824474-3824831 bp Num of repeats: 6 Spacers: s102-s106 CRISPR array Location: 3824474-3824831 bp Num of repeats: 6 Spacers: s102-s106 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1426711-1427667 bp]: array | spacers
           [Locus range 1648741-1648836 bp]: array | spacers
           [Locus range 1760025-1760383 bp]: array | spacers
           [Locus range 1935990-1937202 bp]: array | spacers
           [Locus range 2885378-2885604 bp]: array | spacers
           [Locus range 3098442-3099388 bp]: array | spacers
           [Locus range 3454037-3456960 bp]: array | spacers
           [Locus range 3824252-3824412 bp]: array | spacers
           [Locus range 3824474-3824831 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)