CRISPRone

CRISPRone report for GCA_003457015.1_ASM345701v1

♦ Seq 1: CP020379.1 Clostridioides difficile strain DSM 102860 chromosome, complete genome

⇒Summary: seq-len = 4253785 bp; # of CRISPR array = 10; # of cas gene = 21  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300411-300638 bp 2 Locus 2: 1661706-1661801 bp 3 Locus 3: 1769644-1770002 bp 4 Locus 4: 1945618-1946830 bp 5 Locus 5: 2279586-2283295 bp 6 Locus 6: 2750520-2761506 bp 7 Locus 7: 2811052-2822447 bp 8 Locus 8: 2895010-2895236 bp 9 Locus 9: 3108074-3110591 bp 10 Locus 10: 3460840-3473275 bp 11 Locus 11: 3831022-3831601 bp Zoom in on locus 1 x4 Zoom in on locus 2 x2 Zoom in on locus 3 x6 Zoom in on locus 4 x19 Zoom in on locus 5 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x4 Zoom in on locus 9 x8 x3 Zoom in on locus 10 x44 Zoom in on locus 11 x3 x6 CRISPR array Location: 300411-300638 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 300411-300638 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1661706-1661801 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 1661706-1661801 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 1769644-1770002 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1769644-1770002 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1945618-1946830 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 1945618-1946830 bp Num of repeats: 19 Spacers: s10-s27 Gene: COG0640:csa3 Type: Subtype-I-A Location: 2279586-2279885 bp Gene: unk Type: unknown Location: 2280482-2280616 bp Gene: unk Type: unknown Location: 2280827-2281579 bp Gene: cd09718:cas1 Type: universal Location: 2281640-2283295 bp Gene: cd06127:DEDDh Type: Type-I Location: 2750520-2751026 bp Gene: unk Type: unknown Location: 2751185-2751853 bp Gene: unk Type: unknown Location: 2752266-2752772 bp Gene: cd06127:DEDDh Type: Type-I Location: 2753144-2754181 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2761021-2761506 bp Gene: cas14:cas14 Type: Type-V Location: 2811052-2812170 bp Gene: unk Type: unknown Location: 2812811-2813173 bp Gene: unk Type: unknown Location: 2813192-2814139 bp Gene: cd09641:cas3HD Type: Type-I Location: 2814580-2816988 bp Gene: cd09693:cas5 Type: Type-I Location: 2817015-2817812 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2817828-2818844 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2818863-2820338 bp Gene: pfam01881:cas6 Type: other Location: 2820343-2821080 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2821338-2822447 bp CRISPR array Location: 2895010-2895236 bp Num of repeats: 4 Spacers: s28-s30 CRISPR array Location: 2895010-2895236 bp Num of repeats: 4 Spacers: s28-s30 CRISPR array Location: 3108074-3108564 bp Num of repeats: 8 Spacers: s31-s37 CRISPR array Location: 3108074-3108564 bp Num of repeats: 8 Spacers: s31-s37 CRISPR array Location: 3110432-3110591 bp Num of repeats: 3 Spacers: s38-s39 CRISPR array Location: 3110432-3110591 bp Num of repeats: 3 Spacers: s38-s39 CRISPR array Location: 3460840-3463698 bp Num of repeats: 44 Spacers: s40-s82 CRISPR array Location: 3460840-3463698 bp Num of repeats: 44 Spacers: s40-s82 Gene: cd09725:cas2 Type: universal Location: 3463882-3464148 bp Gene: cd09722:cas1 Type: universal Location: 3464151-3465131 bp Gene: pfam01930:cas4 Type: Type-I Location: 3465134-3465652 bp Gene: COG1203:cas3 Type: Type-I Location: 3465700-3468021 bp Gene: cd09693:cas5 Type: Type-I Location: 3468032-3468733 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3468735-3469649 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3469651-3471501 bp Gene: pfam01881:cas6 Type: other Location: 3471507-3472301 bp Gene: pfam13280:WYL Type: other Location: 3472322-3473275 bp CRISPR array Location: 3831022-3831182 bp Num of repeats: 3 Spacers: s83-s84 CRISPR array Location: 3831022-3831182 bp Num of repeats: 3 Spacers: s83-s84 CRISPR array Location: 3831244-3831601 bp Num of repeats: 6 Spacers: s85-s89 CRISPR array Location: 3831244-3831601 bp Num of repeats: 6 Spacers: s85-s89 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 300411-300638 bp]: array | spacers
           [Locus range 1661706-1661801 bp]: array | spacers
           [Locus range 1769644-1770002 bp]: array | spacers
           [Locus range 1945618-1946830 bp]: array | spacers
           [Locus range 2895010-2895236 bp]: array | spacers
           [Locus range 3108074-3108564 bp]: array | spacers
           [Locus range 3110432-3110591 bp]: array | spacers
           [Locus range 3460840-3463698 bp]: array | spacers
           [Locus range 3831022-3831182 bp]: array | spacers
           [Locus range 3831244-3831601 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)