CRISPRone

CRISPRone report for GCA_003457035.1_ASM345703v1

♦ Seq 1: CP020380.1 Clostridioides difficile strain DSM 102978 chromosome, complete genome

⇒Summary: seq-len = 4253783 bp; # of CRISPR array = 10; # of cas gene = 21  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300411-300638 bp 2 Locus 2: 1661699-1661794 bp 3 Locus 3: 1769637-1769995 bp 4 Locus 4: 1945616-1946828 bp 5 Locus 5: 2279584-2283293 bp 6 Locus 6: 2750518-2761504 bp 7 Locus 7: 2811050-2822445 bp 8 Locus 8: 2895008-2895234 bp 9 Locus 9: 3108072-3110589 bp 10 Locus 10: 3460838-3473273 bp 11 Locus 11: 3831020-3831599 bp Zoom in on locus 1 x4 Zoom in on locus 2 x2 Zoom in on locus 3 x6 Zoom in on locus 4 x19 Zoom in on locus 5 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x4 Zoom in on locus 9 x8 x3 Zoom in on locus 10 x44 Zoom in on locus 11 x3 x6 CRISPR array Location: 300411-300638 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 300411-300638 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1661699-1661794 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 1661699-1661794 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 1769637-1769995 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1769637-1769995 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 1945616-1946828 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 1945616-1946828 bp Num of repeats: 19 Spacers: s10-s27 Gene: COG0640:csa3 Type: Subtype-I-A Location: 2279584-2279883 bp Gene: unk Type: unknown Location: 2280480-2280614 bp Gene: unk Type: unknown Location: 2280825-2281577 bp Gene: cd09718:cas1 Type: universal Location: 2281638-2283293 bp Gene: cd06127:DEDDh Type: Type-I Location: 2750518-2751024 bp Gene: unk Type: unknown Location: 2751183-2751851 bp Gene: unk Type: unknown Location: 2752264-2752770 bp Gene: cd06127:DEDDh Type: Type-I Location: 2753142-2754179 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2761019-2761504 bp Gene: cas14:cas14 Type: Type-V Location: 2811050-2812168 bp Gene: unk Type: unknown Location: 2812809-2813171 bp Gene: unk Type: unknown Location: 2813190-2814137 bp Gene: cd09641:cas3HD Type: Type-I Location: 2814578-2816986 bp Gene: cd09693:cas5 Type: Type-I Location: 2817013-2817810 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2817826-2818842 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2818861-2820336 bp Gene: pfam01881:cas6 Type: other Location: 2820341-2821078 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2821336-2822445 bp CRISPR array Location: 2895008-2895234 bp Num of repeats: 4 Spacers: s28-s30 CRISPR array Location: 2895008-2895234 bp Num of repeats: 4 Spacers: s28-s30 CRISPR array Location: 3108072-3108562 bp Num of repeats: 8 Spacers: s31-s37 CRISPR array Location: 3108072-3108562 bp Num of repeats: 8 Spacers: s31-s37 CRISPR array Location: 3110430-3110589 bp Num of repeats: 3 Spacers: s38-s39 CRISPR array Location: 3110430-3110589 bp Num of repeats: 3 Spacers: s38-s39 CRISPR array Location: 3460838-3463696 bp Num of repeats: 44 Spacers: s40-s82 CRISPR array Location: 3460838-3463696 bp Num of repeats: 44 Spacers: s40-s82 Gene: cd09725:cas2 Type: universal Location: 3463880-3464146 bp Gene: cd09722:cas1 Type: universal Location: 3464149-3465129 bp Gene: pfam01930:cas4 Type: Type-I Location: 3465132-3465650 bp Gene: COG1203:cas3 Type: Type-I Location: 3465698-3468019 bp Gene: cd09693:cas5 Type: Type-I Location: 3468030-3468731 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3468733-3469647 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3469649-3471499 bp Gene: pfam01881:cas6 Type: other Location: 3471505-3472299 bp Gene: pfam13280:WYL Type: other Location: 3472320-3473273 bp CRISPR array Location: 3831020-3831180 bp Num of repeats: 3 Spacers: s83-s84 CRISPR array Location: 3831020-3831180 bp Num of repeats: 3 Spacers: s83-s84 CRISPR array Location: 3831242-3831599 bp Num of repeats: 6 Spacers: s85-s89 CRISPR array Location: 3831242-3831599 bp Num of repeats: 6 Spacers: s85-s89 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 300411-300638 bp]: array | spacers
           [Locus range 1661699-1661794 bp]: array | spacers
           [Locus range 1769637-1769995 bp]: array | spacers
           [Locus range 1945616-1946828 bp]: array | spacers
           [Locus range 2895008-2895234 bp]: array | spacers
           [Locus range 3108072-3108562 bp]: array | spacers
           [Locus range 3110430-3110589 bp]: array | spacers
           [Locus range 3460838-3463696 bp]: array | spacers
           [Locus range 3831020-3831180 bp]: array | spacers
           [Locus range 3831242-3831599 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)