CRISPRone

CRISPRone report for GCA_003458215.1_ASM345821v1

♦ Seq 1: QRTQ01000001.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf1, whole genome shotgun sequence

⇒Summary: seq-len = 741298 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 177821-180205 bp Zoom in on locus 1 x10 Gene: cd09652:cas6 Type: other Location: 177821-178492 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 178504-178884 bp Gene: cd09722:cas1 Type: universal Location: 178877-179116 bp Gene: cd09725:cas2 Type: universal Location: 179119-179382 bp CRISPR array Location: 179595-180205 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 179595-180205 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 179595-180205 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QRTQ01000017.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf17, whole genome shotgun sequence

⇒Summary: seq-len = 104411 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 730-9837 bp Zoom in on locus 1 x30 CRISPR array Location: 730-3002 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 730-3002 bp Num of repeats: 30 Spacers: s1-s29 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 3111-3443 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 3447-4379 bp Gene: unk Type: unknown Location: 4499-4807 bp Gene: unk Type: unknown Location: 4874-5398 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 5414-9724 bp antiRepeat Location: 9792-9837 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 730-3002 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QRTQ01000009.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf9, whole genome shotgun sequence

⇒Summary: seq-len = 203634 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97997-101610 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 97997-98896 bp Gene: unk Type: unknown Location: 98893-100158 bp Gene: unk Type: unknown Location: 100166-100939 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 100942-101610 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)