CRISPRone

CRISPRone report for GCA_003458955.1_ASM345895v1

♦ Seq 1: QRTT01000001.1 Bacteroides fragilis strain AF26-6 AF26-6.Scaf1, whole genome shotgun sequence

⇒Summary: seq-len = 1074800 bp; # of CRISPR array = 2; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 718135-732764 bp 2 Locus 2: 871062-873250 bp Zoom in on locus 1 x14 Zoom in on locus 2 x7 Gene: cls000004:cas6 Type: other Location: 718135-718866 bp Gene: unk Type: unknown Location: 718884-719510 bp Gene: unk Type: unknown Location: 719486-720265 bp Gene: cash17:cash17 Type: Type- Location: 720310-721737 bp Gene: unk Type: unknown Location: 721734-722213 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 722227-723636 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 723641-725443 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 725436-726575 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 726595-727434 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 727447-727857 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 727854-728804 bp Gene: cd09634:cas1 Type: universal Location: 728824-731094 bp Gene: cd09725:cas2 Type: universal Location: 731088-731378 bp CRISPR array Location: 731826-732764 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 731826-732764 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 871062-871476 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 871062-871476 bp Num of repeats: 7 Spacers: s14-s19 Gene: cd09725:cas2 Type: universal Location: 871689-871952 bp Gene: cd09722:cas1 Type: universal Location: 871955-872194 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 872187-872567 bp Gene: cd09652:cas6 Type: other Location: 872579-873250 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 731826-732764 bp]: array | spacers
           [Locus range 871062-871476 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QRTT01000011.1 Bacteroides fragilis strain AF26-6 AF26-6.Scaf11, whole genome shotgun sequence

⇒Summary: seq-len = 119030 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 868-8667 bp Zoom in on locus 1 x13 CRISPR array Location: 868-1832 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 868-1832 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1941-2273 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2277-3209 bp Gene: unk Type: unknown Location: 3329-3637 bp Gene: unk Type: unknown Location: 3704-4228 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4244-8554 bp antiRepeat Location: 8622-8667 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 868-1832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QRTT01000004.1 Bacteroides fragilis strain AF26-6 AF26-6.Scaf4, whole genome shotgun sequence

⇒Summary: seq-len = 495177 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119988-123601 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 119988-120656 bp Gene: unk Type: unknown Location: 120659-121432 bp Gene: unk Type: unknown Location: 121440-122705 bp Gene: pfam13280:WYL Type: other Location: 122702-123601 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)