CRISPRone

CRISPRone report for GCA_003462955.1_ASM346295v1

♦ Seq 1: QSCG01000030.1 Bacteroides fragilis strain OF03-7 OF03-7.Scaf30, whole genome shotgun sequence

⇒Summary: seq-len = 53364 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25600-29210 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 25600-26499 bp Gene: unk Type: unknown Location: 26496-27761 bp Gene: unk Type: unknown Location: 27769-28542 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 28545-29210 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QSCG01000009.1 Bacteroides fragilis strain OF03-7 OF03-7.Scaf9, whole genome shotgun sequence

⇒Summary: seq-len = 112114 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38-1284 bp Zoom in on locus 1 x20 CRISPR array Location: 38-1284 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38-1284 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38-1284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QSCG01000202.1 Bacteroides fragilis strain OF03-7 OF03-7.Scaf202, whole genome shotgun sequence

⇒Summary: seq-len = 2004 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1946 bp Zoom in on locus 1 x31 CRISPR array Location: 0-1946 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 0-1946 bp Num of repeats: 31 Spacers: s1-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1946 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QSCG01000123.1 Bacteroides fragilis strain OF03-7 OF03-7.Scaf123, whole genome shotgun sequence

⇒Summary: seq-len = 8418 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-8392 bp Zoom in on locus 1 x9 CRISPR array Location: 0-533 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 0-533 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 747-1010 bp Gene: cd09722:cas1 Type: universal Location: 1013-2026 bp Gene: pfam01930:cas4 Type: Type-I Location: 2023-2535 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 2599-3657 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 3670-4995 bp Gene: COG1203:cas3 Type: Type-I Location: 4999-7158 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 7148-7711 bp Gene: cd09652:cas6 Type: other Location: 8048-8392 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-533 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: QSCG01000151.1 Bacteroides fragilis strain OF03-7 OF03-7.Scaf151, whole genome shotgun sequence

⇒Summary: seq-len = 4869 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-166 bp Zoom in on locus 1 x3 CRISPR array Location: 0-166 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-166 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-166 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: QSCG01000005.1 Bacteroides fragilis strain OF03-7 OF03-7.Scaf5, whole genome shotgun sequence

⇒Summary: seq-len = 126382 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 70652-81011 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 70652-72460 bp Gene: COG4804:PD-DExK Type: other Location: 76089-77375 bp Gene: unk Type: unknown Location: 77439-78752 bp Gene: unk Type: unknown Location: 79167-80396 bp Gene: mkCas0194:cse2gr11 Type: Subtype-I-E Location: 80481-81011 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)