CRISPRone

CRISPRone report for GCA_003464385.1_ASM346438v1

♦ Seq 1: QRYS01000002.1 Bacteroides fragilis strain AF15-10LB AF15-10LB.Scaf2, whole genome shotgun sequence

⇒Summary: seq-len = 940358 bp; # of CRISPR array = 2; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201673-203862 bp 2 Locus 2: 342308-356802 bp Zoom in on locus 1 x7 Zoom in on locus 2 x13 Gene: cd09652:cas6 Type: other Location: 201673-202344 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202356-202736 bp Gene: cd09722:cas1 Type: universal Location: 202729-202968 bp Gene: cd09725:cas2 Type: universal Location: 202971-203234 bp CRISPR array Location: 203447-203862 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 203447-203862 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 342308-343174 bp Num of repeats: 13 Spacers: s7-s18 CRISPR array Location: 342308-343174 bp Num of repeats: 13 Spacers: s7-s18 Gene: cd09725:cas2 Type: universal Location: 343622-343912 bp Gene: cd09634:cas1 Type: universal Location: 343906-346176 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 346196-347140 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 347143-347553 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 347566-348405 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 348425-349564 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 349557-351359 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 351364-352773 bp Gene: unk Type: unknown Location: 352787-353266 bp Gene: cash17:cash17 Type: Type- Location: 353263-354690 bp Gene: unk Type: unknown Location: 354735-355514 bp Gene: unk Type: unknown Location: 355490-356116 bp Gene: cls000004:cas6 Type: other Location: 356134-356802 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203447-203862 bp]: array | spacers
           [Locus range 342308-343174 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QRYS01000005.1 Bacteroides fragilis strain AF15-10LB AF15-10LB.Scaf5, whole genome shotgun sequence

⇒Summary: seq-len = 404489 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 292834-296447 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 292834-293733 bp Gene: unk Type: unknown Location: 293730-294995 bp Gene: unk Type: unknown Location: 295003-295776 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 295779-296447 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QRYS01000010.1 Bacteroides fragilis strain AF15-10LB AF15-10LB.Scaf10, whole genome shotgun sequence

⇒Summary: seq-len = 152881 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1285-8895 bp Zoom in on locus 1 x12 CRISPR array Location: 1285-2173 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1285-2173 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2282-2614 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2618-3550 bp Gene: unk Type: unknown Location: 3670-3978 bp Gene: unk Type: unknown Location: 4045-4569 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4585-8895 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1285-2173 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)