CRISPRone

CRISPRone report for GCA_003468145.1_ASM346814v1

♦ Seq 1: QSGL01000003.1 Bacteroides fragilis strain AM40-4AC AM40-4AC.Scaf3, whole genome shotgun sequence

⇒Summary: seq-len = 370215 bp; # of CRISPR array = 2; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201545-203734 bp 2 Locus 2: 341966-356531 bp Zoom in on locus 1 x7 Zoom in on locus 2 x14 Gene: cd09652:cas6 Type: other Location: 201545-202216 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 202228-202608 bp Gene: cd09722:cas1 Type: universal Location: 202601-202840 bp Gene: cd09725:cas2 Type: universal Location: 202843-203106 bp CRISPR array Location: 203319-203734 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 203319-203734 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 341966-342903 bp Num of repeats: 14 Spacers: s7-s19 CRISPR array Location: 341966-342903 bp Num of repeats: 14 Spacers: s7-s19 Gene: cd09725:cas2 Type: universal Location: 343351-343641 bp Gene: cd09634:cas1 Type: universal Location: 343635-345905 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 345925-346869 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 346872-347282 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 347295-348134 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 348154-349293 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 349286-351088 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 351093-352502 bp Gene: unk Type: unknown Location: 352516-352995 bp Gene: cash17:cash17 Type: Type- Location: 352992-354419 bp Gene: unk Type: unknown Location: 354464-355243 bp Gene: unk Type: unknown Location: 355219-355845 bp Gene: cls000004:cas6 Type: other Location: 355863-356531 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 203319-203734 bp]: array | spacers
           [Locus range 341966-342903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QSGL01000006.1 Bacteroides fragilis strain AM40-4AC AM40-4AC.Scaf6, whole genome shotgun sequence

⇒Summary: seq-len = 310052 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253056-256669 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 253056-253955 bp Gene: unk Type: unknown Location: 253952-255217 bp Gene: unk Type: unknown Location: 255225-255998 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 256001-256669 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QSGL01000070.1 Bacteroides fragilis strain AM40-4AC AM40-4AC.Scaf70, whole genome shotgun sequence

⇒Summary: seq-len = 502 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-506 bp Zoom in on locus 1 x7 CRISPR array Location: 0-506 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-506 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: QSGL01000020.1 Bacteroides fragilis strain AM40-4AC AM40-4AC.Scaf20, whole genome shotgun sequence

⇒Summary: seq-len = 98011 bp; # of CRISPR array = 0; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91246-97859 bp Zoom in on locus 1 Gene: cd09643:cas9 Type: Subtype-II-C Location: 91246-95556 bp Gene: unk Type: unknown Location: 95572-96096 bp Gene: unk Type: unknown Location: 96163-96471 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 96591-97523 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 97527-97859 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)