CRISPRone

CRISPRone report for GCA_003471465.1_ASM347146v1

♦ Seq 1: QRJE01000004.1 Bacteroides fragilis strain AM18-6 AM18-6.Scaf4, whole genome shotgun sequence

⇒Summary: seq-len = 180947 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125750-135553 bp Zoom in on locus 1 x31 CRISPR array Location: 125750-127691 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 125750-127691 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09725:cas2 Type: universal Location: 127905-128168 bp Gene: cd09722:cas1 Type: universal Location: 128171-129184 bp Gene: pfam01930:cas4 Type: Type-I Location: 129181-129738 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 129758-130816 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 130829-132154 bp Gene: COG1203:cas3 Type: Type-I Location: 132158-134317 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 134307-134870 bp Gene: cd09652:cas6 Type: other Location: 134882-135553 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125750-127691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QRJE01000026.1 Bacteroides fragilis strain AM18-6 AM18-6.Scaf26, whole genome shotgun sequence

⇒Summary: seq-len = 94201 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2152-2399 bp Zoom in on locus 1 x4 CRISPR array Location: 2152-2399 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2152-2399 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2152-2399 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QRJE01000011.1 Bacteroides fragilis strain AM18-6 AM18-6.Scaf11, whole genome shotgun sequence

⇒Summary: seq-len = 143928 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104721-108331 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 104721-105620 bp Gene: unk Type: unknown Location: 105617-106882 bp Gene: unk Type: unknown Location: 106890-107663 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 107666-108331 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)