CRISPRone

CRISPRone report for GCA_003472025.1_ASM347202v1

♦ Seq 1: QRKP01000020.1 Bacteroides fragilis strain AM15-16 AM15-16.Scaf20, whole genome shotgun sequence

⇒Summary: seq-len = 48697 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22531-31579 bp Zoom in on locus 1 x19 CRISPR array Location: 22531-23718 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 22531-23718 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 23931-24194 bp Gene: cd09722:cas1 Type: universal Location: 24197-25210 bp Gene: pfam01930:cas4 Type: Type-I Location: 25207-25719 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 25784-26842 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 26855-28180 bp Gene: COG1203:cas3 Type: Type-I Location: 28184-30343 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 30333-30896 bp Gene: cd09652:cas6 Type: other Location: 30908-31579 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22531-23718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QRKP01000003.1 Bacteroides fragilis strain AM15-16 AM15-16.Scaf3, whole genome shotgun sequence

⇒Summary: seq-len = 539452 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 412975-416588 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 412975-413874 bp Gene: unk Type: unknown Location: 413871-415136 bp Gene: unk Type: unknown Location: 415144-415917 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 415920-416588 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QRKP01000005.1 Bacteroides fragilis strain AM15-16 AM15-16.Scaf5, whole genome shotgun sequence

⇒Summary: seq-len = 377111 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 982-8443 bp Zoom in on locus 1 x10 CRISPR array Location: 982-1720 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 982-1720 bp Num of repeats: 10 Spacers: s1-s9 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 1830-2162 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2166-3098 bp Gene: unk Type: unknown Location: 3218-3526 bp Gene: unk Type: unknown Location: 3593-4117 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4133-8443 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 982-1720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)