CRISPRone

CRISPRone report for GCA_003475385.1_ASM347538v1

♦ Seq 1: QRQH01000006.1 Bacteroides fragilis strain AF32-10 AF32-10.Scaf6, whole genome shotgun sequence

⇒Summary: seq-len = 374893 bp; # of CRISPR array = 2; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17381-19889 bp 2 Locus 2: 195670-210231 bp Zoom in on locus 1 x12 Zoom in on locus 2 x14 Gene: cd09652:cas6 Type: other Location: 17381-18052 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 18064-18444 bp Gene: cd09722:cas1 Type: universal Location: 18437-18676 bp Gene: cd09725:cas2 Type: universal Location: 18679-18942 bp CRISPR array Location: 19155-19889 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 19155-19889 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 195670-196603 bp Num of repeats: 14 Spacers: s12-s24 CRISPR array Location: 195670-196603 bp Num of repeats: 14 Spacers: s12-s24 Gene: cd09725:cas2 Type: universal Location: 197051-197341 bp Gene: cd09634:cas1 Type: universal Location: 197335-199605 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 199625-200569 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 200572-200982 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 200995-201834 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 201854-202993 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 202986-204788 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 204793-206202 bp Gene: unk Type: unknown Location: 206216-206695 bp Gene: cash17:cash17 Type: Type- Location: 206692-208119 bp Gene: unk Type: unknown Location: 208164-208943 bp Gene: unk Type: unknown Location: 208919-209545 bp Gene: cls000004:cas6 Type: other Location: 209563-210231 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19155-19889 bp]: array | spacers
           [Locus range 195670-196603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: QRQH01000007.1 Bacteroides fragilis strain AF32-10 AF32-10.Scaf7, whole genome shotgun sequence

⇒Summary: seq-len = 292798 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 283539-292033 bp Zoom in on locus 1 x22 antiRepeat Location: 283539-283584 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 283652-287962 bp Gene: unk Type: unknown Location: 287978-288502 bp Gene: unk Type: unknown Location: 288569-288877 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 288997-289929 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 289933-290265 bp CRISPR array Location: 290374-292033 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 290374-292033 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 290374-292033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: QRQH01000013.1 Bacteroides fragilis strain AF32-10 AF32-10.Scaf13, whole genome shotgun sequence

⇒Summary: seq-len = 149763 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129907-133520 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 129907-130575 bp Gene: unk Type: unknown Location: 130578-131351 bp Gene: unk Type: unknown Location: 131359-132624 bp Gene: pfam13280:WYL Type: other Location: 132621-133520 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)