CRISPRone

CRISPRone report for GCA_003481905.1_ASM348190v1

♦ Seq 1: CP019858.1 Clostridioides difficile strain DSM 29688 chromosome, complete genome

⇒Summary: seq-len = 4228964 bp; # of CRISPR array = 10; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1341923-1342350 bp 2 Locus 2: 1545884-1546306 bp 3 Locus 3: 1662655-1663414 bp 4 Locus 4: 1752938-1754913 bp 5 Locus 5: 1906075-1907815 bp 6 Locus 6: 2263567-2263792 bp 7 Locus 7: 2605128-2605354 bp 8 Locus 8: 2771111-2778976 bp 9 Locus 9: 2853197-2853753 bp 10 Locus 10: 3597638-3597731 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 Zoom in on locus 4 x9 x13 Zoom in on locus 5 x27 Zoom in on locus 6 x4 Zoom in on locus 7 x4 Zoom in on locus 8 Zoom in on locus 9 x9 Zoom in on locus 10 x2 CRISPR array Location: 1341923-1342350 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1341923-1342350 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1545884-1546306 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 1545884-1546306 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 1662655-1663414 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 1662655-1663414 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 1752938-1753493 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 1752938-1753493 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 1754095-1754913 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 1754095-1754913 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 1906075-1907815 bp Num of repeats: 27 Spacers: s44-s69 CRISPR array Location: 1906075-1907815 bp Num of repeats: 27 Spacers: s44-s69 CRISPR array Location: 2263567-2263792 bp Num of repeats: 4 Spacers: s70-s72 CRISPR array Location: 2263567-2263792 bp Num of repeats: 4 Spacers: s70-s72 CRISPR array Location: 2605128-2605354 bp Num of repeats: 4 Spacers: s73-s75 CRISPR array Location: 2605128-2605354 bp Num of repeats: 4 Spacers: s73-s75 Gene: cd09641:cas3HD Type: Type-I Location: 2771111-2773519 bp Gene: cd09693:cas5 Type: Type-I Location: 2773546-2774343 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2774359-2775372 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2775392-2776867 bp Gene: pfam01881:cas6 Type: other Location: 2776872-2777609 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2777867-2778976 bp CRISPR array Location: 2853197-2853753 bp Num of repeats: 9 Spacers: s76-s83 CRISPR array Location: 2853197-2853753 bp Num of repeats: 9 Spacers: s76-s83 CRISPR array Location: 3597638-3597731 bp Num of repeats: 2 Spacers: s84-s84 CRISPR array Location: 3597638-3597731 bp Num of repeats: 2 Spacers: s84-s84 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1341923-1342350 bp]: array | spacers
           [Locus range 1545884-1546306 bp]: array | spacers
           [Locus range 1662655-1663414 bp]: array | spacers
           [Locus range 1752938-1753493 bp]: array | spacers
           [Locus range 1754095-1754913 bp]: array | spacers
           [Locus range 1906075-1907815 bp]: array | spacers
           [Locus range 2263567-2263792 bp]: array | spacers
           [Locus range 2605128-2605354 bp]: array | spacers
           [Locus range 2853197-2853753 bp]: array | spacers
           [Locus range 3597638-3597731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)