CRISPRone

CRISPRone report for GCA_003481965.1_ASM348196v1

♦ Seq 1: CP019860.1 Clostridioides difficile strain DSM 29632 chromosome, complete genome

⇒Summary: seq-len = 4175826 bp; # of CRISPR array = 10; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1292749-1293763 bp 2 Locus 2: 1503410-1504299 bp 3 Locus 3: 1614598-1615020 bp 4 Locus 4: 1707381-1710436 bp 5 Locus 5: 1848298-1849905 bp 6 Locus 6: 2159783-2159877 bp 7 Locus 7: 2513436-2513990 bp 8 Locus 8: 2676530-2684395 bp 9 Locus 9: 2757675-2757834 bp 10 Locus 10: 3258085-3269216 bp Zoom in on locus 1 x16 Zoom in on locus 2 x14 Zoom in on locus 3 x7 Zoom in on locus 4 x4 x3 Zoom in on locus 5 x25 Zoom in on locus 6 x2 Zoom in on locus 7 x9 Zoom in on locus 8 Zoom in on locus 9 x3 Zoom in on locus 10 x23 CRISPR array Location: 1292749-1293763 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1292749-1293763 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1503410-1504299 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 1503410-1504299 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 1614598-1615020 bp Num of repeats: 7 Spacers: s29-s34 CRISPR array Location: 1614598-1615020 bp Num of repeats: 7 Spacers: s29-s34 CRISPR array Location: 1707381-1707608 bp Num of repeats: 4 Spacers: s35-s37 CRISPR array Location: 1707381-1707608 bp Num of repeats: 4 Spacers: s35-s37 CRISPR array Location: 1710275-1710436 bp Num of repeats: 3 Spacers: s38-s39 CRISPR array Location: 1710275-1710436 bp Num of repeats: 3 Spacers: s38-s39 CRISPR array Location: 1848298-1849905 bp Num of repeats: 25 Spacers: s40-s63 CRISPR array Location: 1848298-1849905 bp Num of repeats: 25 Spacers: s40-s63 CRISPR array Location: 2159783-2159877 bp Num of repeats: 2 Spacers: s64-s64 CRISPR array Location: 2159783-2159877 bp Num of repeats: 2 Spacers: s64-s64 CRISPR array Location: 2513436-2513990 bp Num of repeats: 9 Spacers: s65-s72 CRISPR array Location: 2513436-2513990 bp Num of repeats: 9 Spacers: s65-s72 Gene: cd09641:cas3HD Type: Type-I Location: 2676530-2678938 bp Gene: cd09693:cas5 Type: Type-I Location: 2678965-2679762 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2679778-2680791 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2680811-2682286 bp Gene: pfam01881:cas6 Type: other Location: 2682291-2683028 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2683286-2684395 bp CRISPR array Location: 2757675-2757834 bp Num of repeats: 3 Spacers: s73-s74 CRISPR array Location: 2757675-2757834 bp Num of repeats: 3 Spacers: s73-s74 CRISPR array Location: 3258085-3259557 bp Num of repeats: 23 Spacers: s75-s96 CRISPR array Location: 3258085-3259557 bp Num of repeats: 23 Spacers: s75-s96 Gene: cd09725:cas2 Type: universal Location: 3259862-3260128 bp Gene: cd09722:cas1 Type: universal Location: 3260131-3261111 bp Gene: pfam01930:cas4 Type: Type-I Location: 3261114-3261632 bp Gene: COG1203:cas3 Type: Type-I Location: 3261680-3264001 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3264012-3264713 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3264715-3265629 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3265631-3267481 bp Gene: pfam01881:cas6 Type: other Location: 3267487-3268281 bp Gene: pfam13280:WYL Type: other Location: 3268302-3269216 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1292749-1293763 bp]: array | spacers
           [Locus range 1503410-1504299 bp]: array | spacers
           [Locus range 1614598-1615020 bp]: array | spacers
           [Locus range 1707381-1707608 bp]: array | spacers
           [Locus range 1710275-1710436 bp]: array | spacers
           [Locus range 1848298-1849905 bp]: array | spacers
           [Locus range 2159783-2159877 bp]: array | spacers
           [Locus range 2513436-2513990 bp]: array | spacers
           [Locus range 2757675-2757834 bp]: array | spacers
           [Locus range 3258085-3259557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)