CRISPRone

CRISPRone report for GCA_003482035.1_ASM348203v1

♦ Seq 1: CP012320.1 Clostridioides difficile strain DSM 28196 chromosome, complete genome

⇒Summary: seq-len = 4205365 bp; # of CRISPR array = 11; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1302442-1303396 bp 2 Locus 2: 1513685-1514372 bp 3 Locus 3: 1590319-1594332 bp 4 Locus 4: 1625057-1625351 bp 5 Locus 5: 1717734-1720245 bp 6 Locus 6: 1857522-1858607 bp 7 Locus 7: 2166384-2166478 bp 8 Locus 8: 2208099-2208724 bp 9 Locus 9: 2508505-2509391 bp 10 Locus 10: 2676318-2684193 bp 11 Locus 11: 3287710-3298759 bp 12 Locus 12: 3544034-3550566 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 x14 Zoom in on locus 10 Zoom in on locus 11 x23 Zoom in on locus 12 x10 CRISPR array Location: 1302442-1303396 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1302442-1303396 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1513685-1514372 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1513685-1514372 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1590319-1590918 bp Gene: unk Type: unknown Location: 1591086-1591553 bp Gene: COG2378:WYL Type: other Location: 1591658-1592575 bp Gene: cas14:cas14 Type: Type-V Location: 1593214-1594332 bp CRISPR array Location: 1625057-1625351 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1625057-1625351 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1717734-1718091 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1717734-1718091 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1719955-1720245 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1719955-1720245 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1857522-1858607 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1857522-1858607 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2166384-2166478 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2166384-2166478 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2208099-2208724 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2208099-2208724 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2508505-2509391 bp Num of repeats: 14 Spacers: s64-s76 CRISPR array Location: 2508505-2509391 bp Num of repeats: 14 Spacers: s64-s76 Gene: cd09641:cas3HD Type: Type-I Location: 2676318-2678726 bp Gene: cd09693:cas5 Type: Type-I Location: 2678753-2679559 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2679575-2680588 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2680608-2682083 bp Gene: pfam01881:cas6 Type: other Location: 2682088-2682825 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2683084-2684193 bp CRISPR array Location: 3287710-3289194 bp Num of repeats: 23 Spacers: s77-s98 CRISPR array Location: 3287710-3289194 bp Num of repeats: 23 Spacers: s77-s98 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3288556-3288789 bp Gene: unk Type: unknown Location: 3289011-3289178 bp Gene: cd09725:cas2 Type: universal Location: 3289378-3289644 bp Gene: cd09722:cas1 Type: universal Location: 3289647-3290627 bp Gene: pfam01930:cas4 Type: Type-I Location: 3290630-3291148 bp Gene: COG1203:cas3 Type: Type-I Location: 3291196-3293517 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3293528-3294229 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3294231-3295145 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3295147-3297024 bp Gene: pfam01881:cas6 Type: other Location: 3297030-3297824 bp Gene: pfam13280:WYL Type: other Location: 3297845-3298759 bp CRISPR array Location: 3544034-3544656 bp Num of repeats: 10 Spacers: s99-s107 CRISPR array Location: 3544034-3544656 bp Num of repeats: 10 Spacers: s99-s107 Gene: COG1203:cas3 Type: Type-I Location: 3544909-3546894 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3546905-3547975 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3547996-3549162 bp Gene: pfam01881:cas6 Type: other Location: 3549164-3549928 bp Gene: cd09693:cas5 Type: Type-I Location: 3549919-3550566 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1302442-1303396 bp]: array | spacers
           [Locus range 1513685-1514372 bp]: array | spacers
           [Locus range 1625057-1625351 bp]: array | spacers
           [Locus range 1717734-1718091 bp]: array | spacers
           [Locus range 1719955-1720245 bp]: array | spacers
           [Locus range 1857522-1858607 bp]: array | spacers
           [Locus range 2166384-2166478 bp]: array | spacers
           [Locus range 2208099-2208724 bp]: array | spacers
           [Locus range 2508505-2509391 bp]: array | spacers
           [Locus range 3287710-3289194 bp]: array | spacers
           [Locus range 3544034-3544656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)