CRISPRone

CRISPRone report for GCA_003482065.1_ASM348206v1

♦ Seq 1: CP012321.1 Clostridioides difficile strain DSM 28666 chromosome, complete genome

⇒Summary: seq-len = 4122585 bp; # of CRISPR array = 8; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1548822-1550044 bp 2 Locus 2: 1660336-1661026 bp 3 Locus 3: 1834656-1835999 bp 4 Locus 4: 2164714-2164808 bp 5 Locus 5: 2528697-2529448 bp 6 Locus 6: 2691857-2700175 bp 7 Locus 7: 2775325-2775880 bp 8 Locus 8: 3274980-3286525 bp 9 Locus 9: 3496719-3496812 bp Zoom in on locus 1 x19 Zoom in on locus 2 x11 Zoom in on locus 3 x21 Zoom in on locus 4 x2 Zoom in on locus 5 x12 Zoom in on locus 6 Zoom in on locus 7 x9 Zoom in on locus 8 x31 Zoom in on locus 9 x2 CRISPR array Location: 1548822-1550044 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1548822-1550044 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1660336-1661026 bp Num of repeats: 11 Spacers: s19-s28 CRISPR array Location: 1660336-1661026 bp Num of repeats: 11 Spacers: s19-s28 CRISPR array Location: 1834656-1835999 bp Num of repeats: 21 Spacers: s29-s48 CRISPR array Location: 1834656-1835999 bp Num of repeats: 21 Spacers: s29-s48 CRISPR array Location: 2164714-2164808 bp Num of repeats: 2 Spacers: s49-s49 CRISPR array Location: 2164714-2164808 bp Num of repeats: 2 Spacers: s49-s49 CRISPR array Location: 2528697-2529448 bp Num of repeats: 12 Spacers: s50-s60 CRISPR array Location: 2528697-2529448 bp Num of repeats: 12 Spacers: s50-s60 Gene: cd09641:cas3HD Type: Type-I Location: 2691857-2694265 bp Gene: cd09693:cas5 Type: Type-I Location: 2694292-2695089 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2695105-2696118 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2696138-2697613 bp Gene: pfam01881:cas6 Type: other Location: 2697618-2698355 bp Gene: unk Type: unknown Location: 2698456-2698632 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2699066-2700175 bp CRISPR array Location: 2775325-2775880 bp Num of repeats: 9 Spacers: s61-s68 CRISPR array Location: 2775325-2775880 bp Num of repeats: 9 Spacers: s61-s68 CRISPR array Location: 3274980-3276987 bp Num of repeats: 31 Spacers: s69-s98 CRISPR array Location: 3274980-3276987 bp Num of repeats: 31 Spacers: s69-s98 Gene: cd09725:cas2 Type: universal Location: 3277171-3277437 bp Gene: cd09722:cas1 Type: universal Location: 3277440-3278420 bp Gene: pfam01930:cas4 Type: Type-I Location: 3278423-3278941 bp Gene: COG1203:cas3 Type: Type-I Location: 3278989-3281310 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3281321-3282022 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3282024-3282938 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3282940-3284790 bp Gene: pfam01881:cas6 Type: other Location: 3284796-3285590 bp Gene: pfam13280:WYL Type: other Location: 3285611-3286525 bp CRISPR array Location: 3496719-3496812 bp Num of repeats: 2 Spacers: s99-s99 CRISPR array Location: 3496719-3496812 bp Num of repeats: 2 Spacers: s99-s99 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1548822-1550044 bp]: array | spacers
           [Locus range 1660336-1661026 bp]: array | spacers
           [Locus range 1834656-1835999 bp]: array | spacers
           [Locus range 2164714-2164808 bp]: array | spacers
           [Locus range 2528697-2529448 bp]: array | spacers
           [Locus range 2775325-2775880 bp]: array | spacers
           [Locus range 3274980-3276987 bp]: array | spacers
           [Locus range 3496719-3496812 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)