CRISPRone

CRISPRone report for GCA_003482125.1_ASM348212v1

♦ Seq 1: CP012323.1 Clostridioides difficile strain DSM 28669 chromosome, complete genome

⇒Summary: seq-len = 4137693 bp; # of CRISPR array = 8; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1300610-1301166 bp 2 Locus 2: 1510889-1511313 bp 3 Locus 3: 1620567-1621254 bp 4 Locus 4: 1710472-1713936 bp 5 Locus 5: 1844119-1844678 bp 6 Locus 6: 2612603-2623561 bp 7 Locus 7: 2674770-2684492 bp 8 Locus 8: 2764303-2764727 bp Zoom in on locus 1 x9 Zoom in on locus 2 x7 Zoom in on locus 3 x11 Zoom in on locus 4 x6 x9 x5 Zoom in on locus 5 x9 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x7 CRISPR array Location: 1300610-1301166 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1300610-1301166 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1510889-1511313 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 1510889-1511313 bp Num of repeats: 7 Spacers: s9-s14 CRISPR array Location: 1620567-1621254 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1620567-1621254 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1710472-1710834 bp Num of repeats: 6 Spacers: s25-s29 CRISPR array Location: 1710472-1710834 bp Num of repeats: 6 Spacers: s25-s29 CRISPR array Location: 1711436-1711993 bp Num of repeats: 9 Spacers: s30-s37 CRISPR array Location: 1711436-1711993 bp Num of repeats: 9 Spacers: s30-s37 CRISPR array Location: 1713646-1713936 bp Num of repeats: 5 Spacers: s38-s41 CRISPR array Location: 1713646-1713936 bp Num of repeats: 5 Spacers: s38-s41 CRISPR array Location: 1844119-1844678 bp Num of repeats: 9 Spacers: s42-s49 CRISPR array Location: 1844119-1844678 bp Num of repeats: 9 Spacers: s42-s49 Gene: cd06127:DEDDh Type: Type-I Location: 2612603-2613109 bp Gene: unk Type: unknown Location: 2613268-2613936 bp Gene: unk Type: unknown Location: 2614349-2614855 bp Gene: cd06127:DEDDh Type: Type-I Location: 2615227-2616264 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2623076-2623561 bp Gene: cd09641:cas3HD Type: Type-I Location: 2674770-2677178 bp Gene: cd09693:cas5 Type: Type-I Location: 2677205-2678002 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2678018-2679031 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2679050-2680516 bp Gene: pfam01881:cas6 Type: other Location: 2680521-2681258 bp Gene: unk Type: unknown Location: 2681572-2682030 bp Gene: cas14:cas14 Type: Type-V Location: 2682058-2683230 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2683383-2684492 bp CRISPR array Location: 2764303-2764727 bp Num of repeats: 7 Spacers: s50-s55 CRISPR array Location: 2764303-2764727 bp Num of repeats: 7 Spacers: s50-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1300610-1301166 bp]: array | spacers
           [Locus range 1510889-1511313 bp]: array | spacers
           [Locus range 1620567-1621254 bp]: array | spacers
           [Locus range 1710472-1710834 bp]: array | spacers
           [Locus range 1711436-1711993 bp]: array | spacers
           [Locus range 1713646-1713936 bp]: array | spacers
           [Locus range 1844119-1844678 bp]: array | spacers
           [Locus range 2764303-2764727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)