CRISPRone

CRISPRone report for GCA_003482165.1_ASM348216v1

♦ Seq 1: CP012325.1 Clostridioides difficile strain DSM 29020 chromosome, complete genome

⇒Summary: seq-len = 4139418 bp; # of CRISPR array = 6; # of cas gene = 28  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1283329-1283956 bp 2 Locus 2: 1766348-1767497 bp 3 Locus 3: 2244281-2256656 bp 4 Locus 4: 2294159-2294972 bp 5 Locus 5: 2402961-2414614 bp 6 Locus 6: 2702266-2713219 bp 7 Locus 7: 2765822-2774149 bp 8 Locus 8: 3358359-3370057 bp Zoom in on locus 1 x10 Zoom in on locus 2 x18 Zoom in on locus 3 x45 Zoom in on locus 4 x13 Zoom in on locus 5 x40 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x33 CRISPR array Location: 1283329-1283956 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1283329-1283956 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1766348-1767497 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 1766348-1767497 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 2244281-2247210 bp Num of repeats: 45 Spacers: s27-s70 CRISPR array Location: 2244281-2247210 bp Num of repeats: 45 Spacers: s27-s70 Gene: cd09718:cas1 Type: universal Location: 2254612-2256267 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2256279-2256656 bp CRISPR array Location: 2294159-2294972 bp Num of repeats: 13 Spacers: s71-s82 CRISPR array Location: 2294159-2294972 bp Num of repeats: 13 Spacers: s71-s82 Gene: cd09725:cas2 Type: universal Location: 2402961-2403251 bp Gene: cd09722:cas1 Type: universal Location: 2403462-2404469 bp Gene: pfam01930:cas4 Type: Type-I Location: 2404495-2404989 bp CRISPR array Location: 2405074-2407672 bp Num of repeats: 40 Spacers: s83-s121 CRISPR array Location: 2405074-2407672 bp Num of repeats: 40 Spacers: s83-s121 Gene: unk Type: unknown Location: 2405697-2405825 bp Gene: cd09641:cas3HD Type: Type-I Location: 2407862-2410420 bp Gene: cd09693:cas5 Type: Type-I Location: 2410444-2411184 bp Gene: pfam05107:cas7b Type: Type-I Location: 2411186-2412175 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2412168-2413907 bp Gene: cd09652:cas6 Type: other Location: 2413919-2414614 bp Gene: cd06127:DEDDh Type: Type-I Location: 2702266-2702772 bp Gene: unk Type: unknown Location: 2702931-2703599 bp Gene: unk Type: unknown Location: 2704012-2704518 bp Gene: cd06127:DEDDh Type: Type-I Location: 2704882-2705919 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2712734-2713219 bp Gene: cd09641:cas3HD Type: Type-I Location: 2765822-2768230 bp Gene: cd09693:cas5 Type: Type-I Location: 2768257-2769054 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2769070-2770083 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2770102-2771568 bp Gene: pfam01881:cas6 Type: other Location: 2771573-2772310 bp Gene: unk Type: unknown Location: 2772411-2772587 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2773040-2774149 bp CRISPR array Location: 3358359-3360480 bp Num of repeats: 33 Spacers: s122-s153 CRISPR array Location: 3358359-3360480 bp Num of repeats: 33 Spacers: s122-s153 Gene: cd09725:cas2 Type: universal Location: 3360664-3360930 bp Gene: cd09722:cas1 Type: universal Location: 3360933-3361913 bp Gene: pfam01930:cas4 Type: Type-I Location: 3361916-3362434 bp Gene: COG1203:cas3 Type: Type-I Location: 3362482-3364803 bp Gene: cd09693:cas5 Type: Type-I Location: 3364814-3365515 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3365517-3366431 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3366433-3368283 bp Gene: pfam01881:cas6 Type: other Location: 3368289-3369083 bp Gene: pfam13280:WYL Type: other Location: 3369104-3370057 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1283329-1283956 bp]: array | spacers
           [Locus range 1766348-1767497 bp]: array | spacers
           [Locus range 2244281-2247210 bp]: array | spacers
           [Locus range 2294159-2294972 bp]: array | spacers
           [Locus range 2405074-2407672 bp]: array | spacers
           [Locus range 3358359-3360480 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)