CRISPRone

CRISPRone report for GCA_003482225.1_ASM348222v1

♦ Seq 1: CP012312.1 Clostridioides difficile strain DSM 28670 chromosome, complete genome

⇒Summary: seq-len = 4191653 bp; # of CRISPR array = 9; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1342529-1342954 bp 2 Locus 2: 1555280-1555572 bp 3 Locus 3: 1663959-1664252 bp 4 Locus 4: 1753757-1754944 bp 5 Locus 5: 1887293-1887585 bp 6 Locus 6: 2579580-2582508 bp 7 Locus 7: 2717434-2728393 bp 8 Locus 8: 2779584-2787927 bp 9 Locus 9: 2867780-2868007 bp Zoom in on locus 1 x7 Zoom in on locus 2 x5 Zoom in on locus 3 x5 Zoom in on locus 4 x4 x6 Zoom in on locus 5 x5 Zoom in on locus 6 x9 x8 Zoom in on locus 7 Zoom in on locus 8 Zoom in on locus 9 x4 CRISPR array Location: 1342529-1342954 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1342529-1342954 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1555280-1555572 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 1555280-1555572 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 1663959-1664252 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 1663959-1664252 bp Num of repeats: 5 Spacers: s11-s14 CRISPR array Location: 1753757-1753986 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 1753757-1753986 bp Num of repeats: 4 Spacers: s15-s17 CRISPR array Location: 1754588-1754944 bp Num of repeats: 6 Spacers: s18-s22 CRISPR array Location: 1754588-1754944 bp Num of repeats: 6 Spacers: s18-s22 CRISPR array Location: 1887293-1887585 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 1887293-1887585 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 2579580-2580142 bp Num of repeats: 9 Spacers: s27-s34 CRISPR array Location: 2579580-2580142 bp Num of repeats: 9 Spacers: s27-s34 CRISPR array Location: 2582010-2582508 bp Num of repeats: 8 Spacers: s35-s41 CRISPR array Location: 2582010-2582508 bp Num of repeats: 8 Spacers: s35-s41 Gene: cd06127:DEDDh Type: Type-I Location: 2717434-2717940 bp Gene: unk Type: unknown Location: 2718099-2718767 bp Gene: unk Type: unknown Location: 2719180-2719686 bp Gene: cd06127:DEDDh Type: Type-I Location: 2720059-2721096 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2727908-2728393 bp Gene: cd09641:cas3HD Type: Type-I Location: 2779584-2781992 bp Gene: cd09693:cas5 Type: Type-I Location: 2782019-2782816 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2782832-2783851 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2783870-2785345 bp Gene: pfam01881:cas6 Type: other Location: 2785350-2786087 bp Gene: unk Type: unknown Location: 2786188-2786364 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2786818-2787927 bp CRISPR array Location: 2867780-2868007 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 2867780-2868007 bp Num of repeats: 4 Spacers: s42-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1342529-1342954 bp]: array | spacers
           [Locus range 1555280-1555572 bp]: array | spacers
           [Locus range 1663959-1664252 bp]: array | spacers
           [Locus range 1753757-1753986 bp]: array | spacers
           [Locus range 1754588-1754944 bp]: array | spacers
           [Locus range 1887293-1887585 bp]: array | spacers
           [Locus range 2579580-2580142 bp]: array | spacers
           [Locus range 2582010-2582508 bp]: array | spacers
           [Locus range 2867780-2868007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)