CRISPRone

CRISPRone report for GCA_003482255.1_ASM348225v1

♦ Seq 1: CP016102.1 Clostridioides difficile strain DSM 29627 chromosome, complete genome

⇒Summary: seq-len = 4209547 bp; # of CRISPR array = 7; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1356057-1356152 bp 2 Locus 2: 1568770-1568931 bp 3 Locus 3: 1678190-1678810 bp 4 Locus 4: 1769659-1772714 bp 5 Locus 5: 1904103-1904523 bp 6 Locus 6: 2670387-2681345 bp 7 Locus 7: 2732555-2742278 bp 8 Locus 8: 2822065-2822421 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x10 Zoom in on locus 4 x4 x3 Zoom in on locus 5 x7 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x6 CRISPR array Location: 1356057-1356152 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1356057-1356152 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1568770-1568931 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1568770-1568931 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1678190-1678810 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1678190-1678810 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1769659-1769886 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1769659-1769886 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1772553-1772714 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 1772553-1772714 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 1904103-1904523 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 1904103-1904523 bp Num of repeats: 7 Spacers: s18-s23 Gene: cd06127:DEDDh Type: Type-I Location: 2670387-2670893 bp Gene: unk Type: unknown Location: 2671052-2671720 bp Gene: unk Type: unknown Location: 2672133-2672639 bp Gene: cd06127:DEDDh Type: Type-I Location: 2673011-2674048 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2680860-2681345 bp Gene: cd09641:cas3HD Type: Type-I Location: 2732555-2734963 bp Gene: cd09693:cas5 Type: Type-I Location: 2734990-2735787 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2735803-2736816 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2736836-2738302 bp Gene: pfam01881:cas6 Type: other Location: 2738307-2739044 bp Gene: unk Type: unknown Location: 2739358-2739816 bp Gene: cas14:cas14 Type: Type-V Location: 2739844-2741016 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2741169-2742278 bp CRISPR array Location: 2822065-2822421 bp Num of repeats: 6 Spacers: s24-s28 CRISPR array Location: 2822065-2822421 bp Num of repeats: 6 Spacers: s24-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1356057-1356152 bp]: array | spacers
           [Locus range 1568770-1568931 bp]: array | spacers
           [Locus range 1678190-1678810 bp]: array | spacers
           [Locus range 1769659-1769886 bp]: array | spacers
           [Locus range 1772553-1772714 bp]: array | spacers
           [Locus range 1904103-1904523 bp]: array | spacers
           [Locus range 2822065-2822421 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)