CRISPRone

CRISPRone report for GCA_003482305.1_ASM348230v1

♦ Seq 1: CP016104.1 Clostridioides difficile strain DSM 29629 chromosome, complete genome

⇒Summary: seq-len = 4111235 bp; # of CRISPR array = 8; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1347267-1347823 bp 2 Locus 2: 1557411-1558033 bp 3 Locus 3: 1667351-1667707 bp 4 Locus 4: 1757541-1761397 bp 5 Locus 5: 1893798-1894092 bp 6 Locus 6: 2628305-2639264 bp 7 Locus 7: 2690472-2700204 bp 8 Locus 8: 2777500-2778381 bp Zoom in on locus 1 x9 Zoom in on locus 2 x10 Zoom in on locus 3 x6 Zoom in on locus 4 x9 x12 x5 Zoom in on locus 5 x5 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x14 CRISPR array Location: 1347267-1347823 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1347267-1347823 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1557411-1558033 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 1557411-1558033 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 1667351-1667707 bp Num of repeats: 6 Spacers: s18-s22 CRISPR array Location: 1667351-1667707 bp Num of repeats: 6 Spacers: s18-s22 CRISPR array Location: 1757541-1758096 bp Num of repeats: 9 Spacers: s23-s30 CRISPR array Location: 1757541-1758096 bp Num of repeats: 9 Spacers: s23-s30 CRISPR array Location: 1758698-1759454 bp Num of repeats: 12 Spacers: s31-s41 CRISPR array Location: 1758698-1759454 bp Num of repeats: 12 Spacers: s31-s41 CRISPR array Location: 1761107-1761397 bp Num of repeats: 5 Spacers: s42-s45 CRISPR array Location: 1761107-1761397 bp Num of repeats: 5 Spacers: s42-s45 CRISPR array Location: 1893798-1894092 bp Num of repeats: 5 Spacers: s46-s49 CRISPR array Location: 1893798-1894092 bp Num of repeats: 5 Spacers: s46-s49 Gene: cd06127:DEDDh Type: Type-I Location: 2628305-2628811 bp Gene: unk Type: unknown Location: 2628970-2629638 bp Gene: unk Type: unknown Location: 2630051-2630557 bp Gene: cd06127:DEDDh Type: Type-I Location: 2630930-2631967 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2638779-2639264 bp Gene: cd09641:cas3HD Type: Type-I Location: 2690472-2692880 bp Gene: cd09693:cas5 Type: Type-I Location: 2692907-2693704 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2693720-2694733 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2694753-2696228 bp Gene: pfam01881:cas6 Type: other Location: 2696233-2696970 bp Gene: unk Type: unknown Location: 2697284-2697742 bp Gene: cas14:cas14 Type: Type-V Location: 2697770-2698942 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2699095-2700204 bp CRISPR array Location: 2777500-2778381 bp Num of repeats: 14 Spacers: s50-s62 CRISPR array Location: 2777500-2778381 bp Num of repeats: 14 Spacers: s50-s62 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1347267-1347823 bp]: array | spacers
           [Locus range 1557411-1558033 bp]: array | spacers
           [Locus range 1667351-1667707 bp]: array | spacers
           [Locus range 1757541-1758096 bp]: array | spacers
           [Locus range 1758698-1759454 bp]: array | spacers
           [Locus range 1761107-1761397 bp]: array | spacers
           [Locus range 1893798-1894092 bp]: array | spacers
           [Locus range 2777500-2778381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)