CRISPRone

CRISPRone report for GCA_003482325.1_ASM348232v1

♦ Seq 1: CP016106.1 Clostridioides difficile strain DSM 29637 chromosome, complete genome

⇒Summary: seq-len = 4114585 bp; # of CRISPR array = 13; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1267432-1268314 bp 2 Locus 2: 1474779-1475266 bp 3 Locus 3: 1583666-1583960 bp 4 Locus 4: 1674043-1674138 bp 5 Locus 5: 1812743-1813823 bp 6 Locus 6: 2123291-2123514 bp 7 Locus 7: 2174402-2176933 bp 8 Locus 8: 2482764-2483122 bp 9 Locus 9: 2644925-2652781 bp 10 Locus 10: 2744012-2750258 bp 11 Locus 11: 3270775-3281441 bp Zoom in on locus 1 x14 Zoom in on locus 2 x8 Zoom in on locus 3 x5 Zoom in on locus 4 x2 Zoom in on locus 5 x17 Zoom in on locus 6 x4 Zoom in on locus 7 x39 Zoom in on locus 8 x6 Zoom in on locus 9 Zoom in on locus 10 x3 x4 x11 x9 Zoom in on locus 11 x18 CRISPR array Location: 1267432-1268314 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1267432-1268314 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1474779-1475266 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 1474779-1475266 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 1583666-1583960 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 1583666-1583960 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 1674043-1674138 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 1674043-1674138 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 1812743-1813823 bp Num of repeats: 17 Spacers: s26-s41 CRISPR array Location: 1812743-1813823 bp Num of repeats: 17 Spacers: s26-s41 CRISPR array Location: 2123291-2123514 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 2123291-2123514 bp Num of repeats: 4 Spacers: s42-s44 CRISPR array Location: 2174402-2176933 bp Num of repeats: 39 Spacers: s45-s82 CRISPR array Location: 2174402-2176933 bp Num of repeats: 39 Spacers: s45-s82 CRISPR array Location: 2482764-2483122 bp Num of repeats: 6 Spacers: s83-s87 CRISPR array Location: 2482764-2483122 bp Num of repeats: 6 Spacers: s83-s87 Gene: cd09641:cas3HD Type: Type-I Location: 2644925-2647333 bp Gene: cd09693:cas5 Type: Type-I Location: 2647360-2648157 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2648173-2649186 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2649206-2650672 bp Gene: pfam01881:cas6 Type: other Location: 2650677-2651414 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2651672-2652781 bp CRISPR array Location: 2744012-2744172 bp Num of repeats: 3 Spacers: s88-s89 CRISPR array Location: 2744012-2744172 bp Num of repeats: 3 Spacers: s88-s89 CRISPR array Location: 2744317-2744543 bp Num of repeats: 4 Spacers: s90-s92 CRISPR array Location: 2744317-2744543 bp Num of repeats: 4 Spacers: s90-s92 CRISPR array Location: 2746212-2746898 bp Num of repeats: 11 Spacers: s93-s102 CRISPR array Location: 2746212-2746898 bp Num of repeats: 11 Spacers: s93-s102 CRISPR array Location: 2749704-2750258 bp Num of repeats: 9 Spacers: s103-s110 CRISPR array Location: 2749704-2750258 bp Num of repeats: 9 Spacers: s103-s110 CRISPR array Location: 3270775-3271903 bp Num of repeats: 18 Spacers: s111-s127 CRISPR array Location: 3270775-3271903 bp Num of repeats: 18 Spacers: s111-s127 Gene: cd09725:cas2 Type: universal Location: 3272087-3272353 bp Gene: cd09722:cas1 Type: universal Location: 3272356-3273336 bp Gene: pfam01930:cas4 Type: Type-I Location: 3273339-3273857 bp Gene: cd09641:cas3HD Type: Type-I Location: 3273905-3276226 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3276237-3276938 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3276940-3277854 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3277856-3279706 bp Gene: pfam01881:cas6 Type: other Location: 3279712-3280506 bp Gene: pfam13280:WYL Type: other Location: 3280527-3281441 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1267432-1268314 bp]: array | spacers
           [Locus range 1474779-1475266 bp]: array | spacers
           [Locus range 1583666-1583960 bp]: array | spacers
           [Locus range 1674043-1674138 bp]: array | spacers
           [Locus range 1812743-1813823 bp]: array | spacers
           [Locus range 2123291-2123514 bp]: array | spacers
           [Locus range 2174402-2176933 bp]: array | spacers
           [Locus range 2482764-2483122 bp]: array | spacers
           [Locus range 2744012-2744172 bp]: array | spacers
           [Locus range 2744317-2744543 bp]: array | spacers
           [Locus range 2746212-2746898 bp]: array | spacers
           [Locus range 2749704-2750258 bp]: array | spacers
           [Locus range 3270775-3271903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)