CRISPRone

CRISPRone report for GCA_003482345.1_ASM348234v1

♦ Seq 1: CP019857.1 Clostridioides difficile strain DSM 29745 chromosome, complete genome

⇒Summary: seq-len = 4240646 bp; # of CRISPR array = 11; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1290628-1290789 bp 2 Locus 2: 1314698-1320367 bp 3 Locus 3: 1535237-1536056 bp 4 Locus 4: 1646383-1646875 bp 5 Locus 5: 1848004-1849415 bp 6 Locus 6: 2190794-2190887 bp 7 Locus 7: 2569916-2570337 bp 8 Locus 8: 2735881-2743746 bp 9 Locus 9: 2817029-2817524 bp 10 Locus 10: 3314879-3324992 bp Zoom in on locus 1 x3 Zoom in on locus 2 x5 x5 x2 Zoom in on locus 3 x13 Zoom in on locus 4 x8 Zoom in on locus 5 x22 Zoom in on locus 6 x2 Zoom in on locus 7 x7 Zoom in on locus 8 Zoom in on locus 9 x8 Zoom in on locus 10 x9 CRISPR array Location: 1290628-1290789 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1290628-1290789 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1314698-1314991 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 1314698-1314991 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 1317634-1317927 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 1317634-1317927 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 1320274-1320367 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 1320274-1320367 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 1535237-1536056 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 1535237-1536056 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 1646383-1646875 bp Num of repeats: 8 Spacers: s24-s30 CRISPR array Location: 1646383-1646875 bp Num of repeats: 8 Spacers: s24-s30 CRISPR array Location: 1848004-1849415 bp Num of repeats: 22 Spacers: s31-s51 CRISPR array Location: 1848004-1849415 bp Num of repeats: 22 Spacers: s31-s51 CRISPR array Location: 2190794-2190887 bp Num of repeats: 2 Spacers: s52-s52 CRISPR array Location: 2190794-2190887 bp Num of repeats: 2 Spacers: s52-s52 CRISPR array Location: 2569916-2570337 bp Num of repeats: 7 Spacers: s53-s58 CRISPR array Location: 2569916-2570337 bp Num of repeats: 7 Spacers: s53-s58 Gene: cd09641:cas3HD Type: Type-I Location: 2735881-2738289 bp Gene: cd09693:cas5 Type: Type-I Location: 2738316-2739113 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2739129-2740142 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2740162-2741637 bp Gene: pfam01881:cas6 Type: other Location: 2741642-2742379 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2742637-2743746 bp CRISPR array Location: 2817029-2817524 bp Num of repeats: 8 Spacers: s59-s65 CRISPR array Location: 2817029-2817524 bp Num of repeats: 8 Spacers: s59-s65 CRISPR array Location: 3314879-3315427 bp Num of repeats: 9 Spacers: s66-s73 CRISPR array Location: 3314879-3315427 bp Num of repeats: 9 Spacers: s66-s73 Gene: cd09725:cas2 Type: universal Location: 3315611-3315877 bp Gene: cd09722:cas1 Type: universal Location: 3315880-3316860 bp Gene: pfam01930:cas4 Type: Type-I Location: 3316944-3317381 bp Gene: COG1203:cas3 Type: Type-I Location: 3317429-3319750 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3319761-3320462 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3320464-3321378 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3321380-3323257 bp Gene: pfam01881:cas6 Type: other Location: 3323263-3324057 bp Gene: pfam13280:WYL Type: other Location: 3324078-3324992 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1290628-1290789 bp]: array | spacers
           [Locus range 1314698-1314991 bp]: array | spacers
           [Locus range 1317634-1317927 bp]: array | spacers
           [Locus range 1320274-1320367 bp]: array | spacers
           [Locus range 1535237-1536056 bp]: array | spacers
           [Locus range 1646383-1646875 bp]: array | spacers
           [Locus range 1848004-1849415 bp]: array | spacers
           [Locus range 2190794-2190887 bp]: array | spacers
           [Locus range 2569916-2570337 bp]: array | spacers
           [Locus range 2817029-2817524 bp]: array | spacers
           [Locus range 3314879-3315427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)