CRISPRone

CRISPRone report for GCA_003482365.1_ASM348236v1

♦ Seq 1: CP019864.1 Clostridioides difficile strain DSM 29747 chromosome, complete genome

⇒Summary: seq-len = 4071596 bp; # of CRISPR array = 6; # of cas gene = 27  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1244673-1245300 bp 2 Locus 2: 1745745-1746894 bp 3 Locus 3: 2176738-2189048 bp 4 Locus 4: 2226551-2227364 bp 5 Locus 5: 2335353-2347006 bp 6 Locus 6: 2634658-2645611 bp 7 Locus 7: 2698214-2704702 bp 8 Locus 8: 3290518-3302216 bp Zoom in on locus 1 x10 Zoom in on locus 2 x18 Zoom in on locus 3 x44 Zoom in on locus 4 x13 Zoom in on locus 5 x40 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x33 CRISPR array Location: 1244673-1245300 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1244673-1245300 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1745745-1746894 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 1745745-1746894 bp Num of repeats: 18 Spacers: s10-s26 CRISPR array Location: 2176738-2179602 bp Num of repeats: 44 Spacers: s27-s69 CRISPR array Location: 2176738-2179602 bp Num of repeats: 44 Spacers: s27-s69 Gene: cd09718:cas1 Type: universal Location: 2187004-2188659 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2188671-2189048 bp CRISPR array Location: 2226551-2227364 bp Num of repeats: 13 Spacers: s70-s81 CRISPR array Location: 2226551-2227364 bp Num of repeats: 13 Spacers: s70-s81 Gene: cd09725:cas2 Type: universal Location: 2335353-2335643 bp Gene: cd09722:cas1 Type: universal Location: 2335854-2336861 bp Gene: pfam01930:cas4 Type: Type-I Location: 2336887-2337381 bp CRISPR array Location: 2337466-2340064 bp Num of repeats: 40 Spacers: s82-s120 CRISPR array Location: 2337466-2340064 bp Num of repeats: 40 Spacers: s82-s120 Gene: unk Type: unknown Location: 2338089-2338217 bp Gene: cd09641:cas3HD Type: Type-I Location: 2340254-2342812 bp Gene: cd09693:cas5 Type: Type-I Location: 2342836-2343576 bp Gene: pfam05107:cas7b Type: Type-I Location: 2343578-2344567 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2344560-2346299 bp Gene: cd09652:cas6 Type: other Location: 2346311-2347006 bp Gene: cd06127:DEDDh Type: Type-I Location: 2634658-2635164 bp Gene: unk Type: unknown Location: 2635323-2635991 bp Gene: unk Type: unknown Location: 2636404-2636910 bp Gene: cd06127:DEDDh Type: Type-I Location: 2637274-2638311 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2645126-2645611 bp Gene: cd09641:cas3HD Type: Type-I Location: 2698214-2700622 bp Gene: cd09693:cas5 Type: Type-I Location: 2700649-2701446 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2701462-2702475 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2702494-2703960 bp Gene: pfam01881:cas6 Type: other Location: 2703965-2704702 bp CRISPR array Location: 3290518-3292639 bp Num of repeats: 33 Spacers: s121-s152 CRISPR array Location: 3290518-3292639 bp Num of repeats: 33 Spacers: s121-s152 Gene: cd09725:cas2 Type: universal Location: 3292823-3293089 bp Gene: cd09722:cas1 Type: universal Location: 3293092-3294072 bp Gene: pfam01930:cas4 Type: Type-I Location: 3294075-3294593 bp Gene: COG1203:cas3 Type: Type-I Location: 3294641-3296962 bp Gene: cd09693:cas5 Type: Type-I Location: 3296973-3297674 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3297676-3298590 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3298592-3300442 bp Gene: pfam01881:cas6 Type: other Location: 3300448-3301242 bp Gene: pfam13280:WYL Type: other Location: 3301263-3302216 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1244673-1245300 bp]: array | spacers
           [Locus range 1745745-1746894 bp]: array | spacers
           [Locus range 2176738-2179602 bp]: array | spacers
           [Locus range 2226551-2227364 bp]: array | spacers
           [Locus range 2337466-2340064 bp]: array | spacers
           [Locus range 3290518-3292639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)