CRISPRone

CRISPRone report for GCA_003490105.1_ASM349010v1

♦ Seq 1: CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome

⇒Summary: seq-len = 4214812 bp; # of CRISPR array = 10; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1311260-1312011 bp 2 Locus 2: 1523898-1526114 bp 3 Locus 3: 1637482-1638563 bp 4 Locus 4: 1726531-1726626 bp 5 Locus 5: 1875709-1876592 bp 6 Locus 6: 2189084-2189375 bp 7 Locus 7: 2240459-2242001 bp 8 Locus 8: 2600718-2601339 bp 9 Locus 9: 2766199-2774064 bp 10 Locus 10: 2847345-2847503 bp 11 Locus 11: 3363081-3374573 bp Zoom in on locus 1 x12 Zoom in on locus 2 x34 Zoom in on locus 3 x17 Zoom in on locus 4 x2 Zoom in on locus 5 x14 Zoom in on locus 6 x5 Zoom in on locus 7 x24 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x3 Zoom in on locus 11 x30 CRISPR array Location: 1311260-1312011 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1311260-1312011 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1523898-1526114 bp Num of repeats: 34 Spacers: s12-s44 CRISPR array Location: 1523898-1526114 bp Num of repeats: 34 Spacers: s12-s44 CRISPR array Location: 1637482-1638563 bp Num of repeats: 17 Spacers: s45-s60 CRISPR array Location: 1637482-1638563 bp Num of repeats: 17 Spacers: s45-s60 CRISPR array Location: 1726531-1726626 bp Num of repeats: 2 Spacers: s61-s61 CRISPR array Location: 1726531-1726626 bp Num of repeats: 2 Spacers: s61-s61 CRISPR array Location: 1875709-1876592 bp Num of repeats: 14 Spacers: s62-s74 CRISPR array Location: 1875709-1876592 bp Num of repeats: 14 Spacers: s62-s74 CRISPR array Location: 2189084-2189375 bp Num of repeats: 5 Spacers: s75-s78 CRISPR array Location: 2189084-2189375 bp Num of repeats: 5 Spacers: s75-s78 CRISPR array Location: 2240459-2242001 bp Num of repeats: 24 Spacers: s79-s101 CRISPR array Location: 2240459-2242001 bp Num of repeats: 24 Spacers: s79-s101 CRISPR array Location: 2600718-2601339 bp Num of repeats: 10 Spacers: s102-s110 CRISPR array Location: 2600718-2601339 bp Num of repeats: 10 Spacers: s102-s110 Gene: cd09641:cas3HD Type: Type-I Location: 2766199-2768607 bp Gene: cd09693:cas5 Type: Type-I Location: 2768634-2769431 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2769447-2770460 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2770480-2771955 bp Gene: pfam01881:cas6 Type: other Location: 2771960-2772697 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2772955-2774064 bp CRISPR array Location: 2847345-2847503 bp Num of repeats: 3 Spacers: s111-s112 CRISPR array Location: 2847345-2847503 bp Num of repeats: 3 Spacers: s111-s112 CRISPR array Location: 3363081-3365008 bp Num of repeats: 30 Spacers: s113-s141 CRISPR array Location: 3363081-3365008 bp Num of repeats: 30 Spacers: s113-s141 Gene: cd09725:cas2 Type: universal Location: 3365192-3365458 bp Gene: cd09722:cas1 Type: universal Location: 3365461-3366441 bp Gene: pfam01930:cas4 Type: Type-I Location: 3366444-3366962 bp Gene: COG1203:cas3 Type: Type-I Location: 3367010-3369331 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3369342-3370043 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3370045-3370959 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3370961-3372838 bp Gene: pfam01881:cas6 Type: other Location: 3372844-3373638 bp Gene: pfam13280:WYL Type: other Location: 3373659-3374573 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1311260-1312011 bp]: array | spacers
           [Locus range 1523898-1526114 bp]: array | spacers
           [Locus range 1637482-1638563 bp]: array | spacers
           [Locus range 1726531-1726626 bp]: array | spacers
           [Locus range 1875709-1876592 bp]: array | spacers
           [Locus range 2189084-2189375 bp]: array | spacers
           [Locus range 2240459-2242001 bp]: array | spacers
           [Locus range 2600718-2601339 bp]: array | spacers
           [Locus range 2847345-2847503 bp]: array | spacers
           [Locus range 3363081-3365008 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)