CRISPRone

CRISPRone report for GCA_003571805.1_ASM357180v1

♦ Seq 1: CP032257.1 Pseudomonas aeruginosa strain AR_0111 chromosome, complete genome

⇒Summary: seq-len = 6946231 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2954267-2962528 bp 2 Locus 2: 4911806-4912734 bp 3 Locus 3: 6574989-6586567 bp Zoom in on locus 1 Zoom in on locus 2 x16 Zoom in on locus 3 x23 x28 Gene: COG1199:DinG Type: Subtype-IV-A Location: 2954267-2956633 bp Gene: unk Type: unknown Location: 2957026-2957604 bp Gene: unk Type: unknown Location: 2957748-2957903 bp Gene: COG2378:WYL Type: other Location: 2958157-2958999 bp Gene: pfam13280:WYL Type: other Location: 2959741-2960757 bp Gene: mkCas0115:csx3 Type: other Location: 2960918-2962528 bp CRISPR array Location: 4911806-4912734 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4911806-4912734 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 6574989-6576334 bp Num of repeats: 23 Spacers: s16-s37 CRISPR array Location: 6574989-6576334 bp Num of repeats: 23 Spacers: s16-s37 Gene: cd09739:cas6f Type: other Location: 6576518-6577081 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6577085-6578113 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6578124-6579107 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6579094-6580398 bp Gene: COG1203:cas3 Type: Type-I Location: 6580456-6583686 bp Gene: cd09718:cas1 Type: universal Location: 6583683-6584657 bp CRISPR array Location: 6584919-6586567 bp Num of repeats: 28 Spacers: s38-s64 CRISPR array Location: 6584919-6586567 bp Num of repeats: 28 Spacers: s38-s64 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4911806-4912734 bp]: array | spacers
           [Locus range 6574989-6576334 bp]: array | spacers
           [Locus range 6584919-6586567 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CP032256.1 Pseudomonas aeruginosa strain AR_0111 plasmid unnamed, complete sequence

⇒Summary: seq-len = 129422 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65257-70729 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 65257-67431 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 67520-68245 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 68274-69029 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 69029-70072 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 70079-70729 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)