CRISPRone

CRISPRone report for GCA_003585055.1_ASM358505v1

♦ Seq 1: LSQH01000009.1 Pseudomonas aeruginosa strain PA_4823 NODE_15_length_177567_cov_7.81306, whole genome shotgun sequence

⇒Summary: seq-len = 177500 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33698-43645 bp Zoom in on locus 1 x33 CRISPR array Location: 33698-35853 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 33698-35853 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 36035-36325 bp Gene: cd09721:cas1 Type: universal Location: 36335-37375 bp Gene: pfam01930:cas4 Type: Type-I Location: 37379-38011 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 38030-38899 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 38896-40689 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 40686-41360 bp Gene: cd09641:cas3HD Type: Type-I Location: 41411-43645 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33698-35853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSQH01000057.1 Pseudomonas aeruginosa strain PA_4823 NODE_5_length_412275_cov_8.25905, whole genome shotgun sequence

⇒Summary: seq-len = 412275 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345-853 bp Zoom in on locus 1 x9 CRISPR array Location: 345-853 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 345-853 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 345-853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)