CRISPRone

CRISPRone report for GCA_003585115.1_ASM358511v1

♦ Seq 1: LSQK01000055.1 Pseudomonas aeruginosa strain PA_153837 NODE_6_length_407030_cov_33.9818, whole genome shotgun sequence

⇒Summary: seq-len = 407030 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133-1181 bp Zoom in on locus 1 x18 CRISPR array Location: 133-1181 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 133-1181 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133-1181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSQK01000020.1 Pseudomonas aeruginosa strain PA_153837 NODE_24_length_15004_cov_37.5057, whole genome shotgun sequence

⇒Summary: seq-len = 15004 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1824-11041 bp Zoom in on locus 1 x22 CRISPR array Location: 1824-3252 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1824-3252 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 3432-3722 bp Gene: cd09721:cas1 Type: universal Location: 3732-4772 bp Gene: pfam01930:cas4 Type: Type-I Location: 4776-5408 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 5427-6296 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 6293-8086 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 8083-8757 bp Gene: cd09641:cas3HD Type: Type-I Location: 8807-11041 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1824-3252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LSQK01000016.1 Pseudomonas aeruginosa strain PA_153837 NODE_21_length_47902_cov_34.9438, whole genome shotgun sequence

⇒Summary: seq-len = 47902 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38128-47770 bp Zoom in on locus 1 x13 x2 x3 CRISPR array Location: 38128-38876 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 38128-38876 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 39059-39622 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39626-40654 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40665-41648 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41635-42939 bp Gene: COG1203:cas3 Type: Type-I Location: 42997-46227 bp Gene: cd09718:cas1 Type: universal Location: 46224-47198 bp CRISPR array Location: 47463-47550 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 47463-47550 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 47623-47770 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 47623-47770 bp Num of repeats: 3 Spacers: s14-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38128-38876 bp]: array | spacers
           [Locus range 47463-47550 bp]: array | spacers
           [Locus range 47623-47770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)